View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_low_1 (Length: 1022)
Name: NF3845_low_1
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 434 - 919
Target Start/End: Original strand, 9562100 - 9562588
Alignment:
| Q |
434 |
gcgggtggctttcaccatccatcacatcaccacaagtctaatgtctacatgatgaagaaacacgaatttggatagcaaggggtaaggatttgagaaaggc |
533 |
Q |
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| T |
9562100 |
gcgggtggctatcaccgaccatcgcatcaccacaagtctgatgtctacatgatgaaaaaacacgaatttggatagaaaggggaaaggatttgagaaaggc |
9562199 |
T |
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| Q |
534 |
agtggatatgttttcttagagagaaggtaagataatttagagagagaatgactcgttaattatttaatgcttttgaacataacgatcgagtgtggcaacg |
633 |
Q |
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| T |
9562200 |
ggtggatatgttttcttagagagaaggtaggatagtttagagagagaaggactcattaattatttaatgcttttgaacataacgatcgagtgtggcaacg |
9562299 |
T |
|
| Q |
634 |
actaatgatttcctatagactaatttaatctaatggttaaaacgagtggtataccagtgatgaattta----aaccctcaccctagaatctatctcaatt |
729 |
Q |
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| T |
9562300 |
actaatgatttcctatagactaatttaatctaatggttaaaacgagtggtataccggtgatgaatttaattgaaccatcactatagaatccacctcaatt |
9562399 |
T |
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| Q |
730 |
ataatgattaaaaatgttttgacttttatagtaaaaaatcacacataacattcatgattgtgatgtatgtaagtttttacattttaaaatcatacagtaa |
829 |
Q |
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| T |
9562400 |
ataatgattaaaaatg-tttcacttttatcgtaaaaaatcacacataacattgatgattgtgatgtatgtaagtttttacattttaaaatcatacagtaa |
9562498 |
T |
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| Q |
830 |
tattttaaaaccagatattaaattaaatttatacaaagacaaatccaaacataaacttccacgaaaaagtggtttgttgatagtttgaat |
919 |
Q |
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| T |
9562499 |
tattttaaaaccagatattaaattaaatttataccaagacaaatccaaacataaacttccacgaaaaagtggtttgtttatagtttgaat |
9562588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 163 - 402
Target Start/End: Original strand, 9561864 - 9562102
Alignment:
| Q |
163 |
tggtgttaatagacaaccaccgaccccggaacagctacaaacctccggcgcaaaccaatagcagccaccaaccaaaaccagatcgaagtgaagaaacgaa |
262 |
Q |
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| T |
9561864 |
tggtgttaacagactgccaccgaccccggaatagctacaaacctccggtgcaaaccaatagcagacaccaaccaaaaccagatcgaagtgaagaaacgaa |
9561963 |
T |
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| Q |
263 |
ttcataaacgatcctatatccaaggtgggtctcaaactgaaagaaaagcgtcgagaaaatcgaaacggagagatgaaatagcgccagccaacaccatgac |
362 |
Q |
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| T |
9561964 |
ttcataaacgttcctatatccaagctgggtctgaaactgaaagaaaagcgccgagaaaatcgaatatgagagatgaaatagcgccaaccaacaccatgac |
9562063 |
T |
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| Q |
363 |
agcaaaccgcaaacaacaacatccaccaaaaccaccggcg |
402 |
Q |
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| T |
9562064 |
agc-aaccgcaaacaacaacaaccaccaaaaccaccggcg |
9562102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 747 - 919
Target Start/End: Original strand, 9570515 - 9570682
Alignment:
| Q |
747 |
tttgacttttatagtaaaaaatcacacataacattcatgattgtgatgtatgtaagtttttacattttaaaatcatacagtaatattttaaaaccagata |
846 |
Q |
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| T |
9570515 |
tttgacttttatcgtaaaaagtcacacacaacattgatgattgtgatgtatgtaagtttttacactttaaaatcata-----atattttaaaaccagata |
9570609 |
T |
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| Q |
847 |
ttaaattaaatttatacaaagacaaatccaaacataaacttccacgaaaaagtggtttgttgatagtttgaat |
919 |
Q |
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| T |
9570610 |
ttaaattaaatttataccaagacaaatccaaacataaacttccacgaaaaagtggtttatttatagtttgaat |
9570682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 9561702 - 9561779
Alignment:
| Q |
1 |
gtgagaaggcagccactgccggagcgacagaatccaccaacacagcccactggagttcaaagagatgctagatctgat |
78 |
Q |
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| T |
9561702 |
gtgagaaggcaagcactgccggagcgacagaatccaccaacacaacccactggagttcaaagagatgctagatctgat |
9561779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 621 - 684
Target Start/End: Original strand, 36539973 - 36540036
Alignment:
| Q |
621 |
gagtgtggcaacgactaatgatttcctatagactaatttaatctaatggttaaaacgagtggta |
684 |
Q |
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| T |
36539973 |
gagtgtggcaatgtctaatgatatgctatagaccaatttaatctaatggtaaaaaagagtggta |
36540036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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