View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_low_22 (Length: 239)
Name: NF3845_low_22
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 41463038 - 41463255
Alignment:
| Q |
18 |
acatgtaccatatagaaatcatcttaataaataaataaacaagttggtagagtttcatgcatgaatatactctatatatactccatatatagatacaagc |
117 |
Q |
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| T |
41463038 |
acatgtaccatatagaaatcatcttaataaataaataaacaagttggtagagtttcatgcatgaatatactctatatatactccatatatagatacaagc |
41463137 |
T |
|
| Q |
118 |
ctgccatgaatcacacacatatcaccatttgctctctccttctatatacattttcctcatggaacatcccagcttatcattcttacccttccttttattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41463138 |
ctgccatgaatcacacacatatcaccatttgctctctccttctatatacattttcctcatggaacatcccagcttatcattcttacccttccttttattt |
41463237 |
T |
|
| Q |
218 |
tcaacaagtttcattctt |
235 |
Q |
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|||||||||||||||||| |
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| T |
41463238 |
tcaacaagtttcattctt |
41463255 |
T |
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