View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_low_23 (Length: 238)
Name: NF3845_low_23
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27445111 - 27445330
Alignment:
| Q |
1 |
aataaatttgagttggttcttaatgcttgcagtcattaatatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggagg |
100 |
Q |
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| T |
27445111 |
aataaatttgagttggttcttaatgcttgcagtcattaatatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggagg |
27445210 |
T |
|
| Q |
101 |
accacgagattgggagtcaatgggagccatagaacttaagggagacaatgacatataatagatcacatggtgttatcttagatgattttctcaaattttc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27445211 |
accatgagattgggagtcaatgggagccatagaacttaagggagacaatgacatataatagatcacatggtgttgtcttagatgattttctcaaattttc |
27445310 |
T |
|
| Q |
201 |
aacatcaaatgtcataataa |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
27445311 |
aacatcaaatgtcataataa |
27445330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 27431531 - 27431698
Alignment:
| Q |
50 |
tgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggaggaccacgagattgggagtcaatgggagccatagaacttaagggagacaat |
149 |
Q |
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| T |
27431531 |
tgaaaggatatggaccaagcagtcggcaacttgaatgatcagtgaaggaggaccatgagatttg-agtcattgggagccatagaacctaaggtagacaag |
27431629 |
T |
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| Q |
150 |
gacatataatagatcacatggtgttatcttagatgattttctcaaattttcaacatcaaatgtcataata |
219 |
Q |
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| T |
27431630 |
gacatataatagttcacatggtgttacctttgaagattatct-aaagggtcaacatcaaatgtcaaaata |
27431698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 27476484 - 27476407
Alignment:
| Q |
27 |
ttgcagtcattaatatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggaggacca |
104 |
Q |
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| T |
27476484 |
ttgcagtcaataatatatatagatgaaaggatatttaacaaacagtcggcaactacaatgatcaattaaggaggacca |
27476407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 27514116 - 27514189
Alignment:
| Q |
27 |
ttgcagtcattaatatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggagg |
100 |
Q |
| |
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| T |
27514116 |
ttgcagcctttaatatatatagatgaaaggatatgtaacaaacagtcggcagctacaatgatcaatgaaggagg |
27514189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 27516926 - 27517024
Alignment:
| Q |
6 |
atttgagttggttcttaatgcttgcagtcattaatatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggaggacca |
104 |
Q |
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| T |
27516926 |
atttgtgttggtgctaaatgcttgcagccatgaatatatatagatgaacggatacttaacaaaccgtcggcaactataatgatcagtgaaggaggacca |
27517024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 27526455 - 27526528
Alignment:
| Q |
27 |
ttgcagtcattaatatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggagg |
100 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||||| |||||||| |||||| | |||||| ||||||||| |
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| T |
27526455 |
ttgcagccatgaatatatatagatgaaaggatatgtaacaaacagtcggcaactatagtgatcagtgaaggagg |
27526528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 27523759 - 27523828
Alignment:
| Q |
40 |
tatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggaggaccacgaga |
109 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| ||||| |||| ||||||||||||||||| |||| |
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| T |
27523759 |
tatatatagatgaaaggatatgttacaaacagtcgacaactacaatggtcaatgaaggaggaccatgaga |
27523828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 27498211 - 27498155
Alignment:
| Q |
24 |
tgcttgcagtcattaatatatatagatgaaaggatatgtaataaacagtcagcaact |
80 |
Q |
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| T |
27498211 |
tgcttgaaggcatgaatatatatagatgaaaggatatgtaacaaacagtcggcaact |
27498155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 27500686 - 27500751
Alignment:
| Q |
39 |
atatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggaggacca |
104 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||| |||||| |||||||| ||||||||||||| |
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| T |
27500686 |
atatatatagatgaaaggatacttaacaaaccgtcggcaactataatgatcagtgaaggaggacca |
27500751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 27469254 - 27469171
Alignment:
| Q |
27 |
ttgcagtcattaatatatatagatgaaaggatatgtaataaa-cagtcagcaacttgaatgatcaatgaaggaggaccacgagat |
110 |
Q |
| |
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|||||| |||||||||||||||||||| ||||| |||| || | |||||||||| |||||||||||||||||| ||| ||||| |
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| T |
27469254 |
ttgcagccattaatatatatagatgaa-ggataaataatgaatccgtcagcaactacaatgatcaatgaaggagggccatgagat |
27469171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 27570382 - 27570424
Alignment:
| Q |
6 |
atttgagttggttcttaatgcttgcagtcattaatatatatag |
48 |
Q |
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| T |
27570382 |
atttgtgttggttctaaatgcttgcagtcatgaatatatatag |
27570424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 27466637 - 27466584
Alignment:
| Q |
6 |
atttgagttggttcttaatgcttgcagtcattaatatatatagatgaaaggata |
59 |
Q |
| |
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||||| |||||| || || |||||||| ||| |||||||||||||||||||||| |
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|
| T |
27466637 |
atttgtgttggtgctaaaggcttgcagccatgaatatatatagatgaaaggata |
27466584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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