View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3845_low_25 (Length: 237)
Name: NF3845_low_25
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 34462245 - 34462036
Alignment:
| Q |
11 |
tccctacactaaaaagtttttcattgatccttgaatatttttcaaaataatttgtaattggatctctaataagaaatgatttaaaagttcataaaagact |
110 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34462245 |
tccctaccctaaagagtttttcattgatccttgaat---tttcaaaataatttgtaattggatctctaataagaaatgatttaaaagttcataaaagact |
34462149 |
T |
|
| Q |
111 |
taattacaaattatttaaaagttcagagataagattacannnnnnnnncaatgacc--tattgaaaaaataccatataattcaaggggccttgataatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34462148 |
taattacaaattatttaaaagttcagagataagattacatttttttttcaatgacctatattgaaaaaataccatataattcaaggggccttgataatta |
34462049 |
T |
|
| Q |
209 |
aacctctaattat |
221 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34462048 |
aacctctaattat |
34462036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University