View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_low_27 (Length: 235)
Name: NF3845_low_27
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_low_27 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0542 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 4182419 - 4182252
Alignment:
| Q |
65 |
tgtcgtagtacggtgtcgcatatcaacctatgttgaccgaaaaatcatttgttnnnnnnngtacttaccagatagatgtatgggaaaaatattcaaaatt |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||| ||||||||||||| ||||||||||| ||||| |
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| T |
4182419 |
tgtcgtagtacggtgtcgcatatcaacctatgttgaccaaaaaatcattt-ttaaaaaaagtatttactagatagatgtatgcgaaaaatattcgaaatt |
4182321 |
T |
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| Q |
165 |
gtcctatcaatatattcattctagaactgtcgcagacaaatttgccctccctctctctaactccaataaac |
235 |
Q |
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| T |
4182320 |
gtcctatcaatat--tcattctagaactggcacagacaaatttgccctccctctctctatctccaataaac |
4182252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 19896586 - 19896554
Alignment:
| Q |
16 |
taataaattaattgtacaaatatcatttctcta |
48 |
Q |
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| T |
19896586 |
taataaattagttgtacaaatatcatttctcta |
19896554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 1255971 - 1256001
Alignment:
| Q |
24 |
taattgtacaaatatcatttctctaatataa |
54 |
Q |
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| T |
1255971 |
taattgtacaaatatcatttctctaatataa |
1256001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 26396518 - 26396550
Alignment:
| Q |
18 |
ataaattaattgtacaaatatcatttctctaat |
50 |
Q |
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| T |
26396518 |
ataaaataattgtacaaatatcatttctctaat |
26396550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 25345368 - 25345338
Alignment:
| Q |
18 |
ataaattaattgtacaaatatcatttctcta |
48 |
Q |
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| T |
25345368 |
ataaattaattgtacaaatatcatttctcta |
25345338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 4954492 - 4954463
Alignment:
| Q |
20 |
aaattaattgtacaaatatcatttctctaa |
49 |
Q |
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| T |
4954492 |
aaattaattgtacaaatatcatttctctaa |
4954463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 12417654 - 12417625
Alignment:
| Q |
18 |
ataaattaattgtacaaatatcatttctct |
47 |
Q |
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| T |
12417654 |
ataaattaattgtacaaatatcatttctct |
12417625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0542 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 2880 - 2843
Alignment:
| Q |
20 |
aaattaattgtacaaatatcatttctctaatataaatt |
57 |
Q |
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| T |
2880 |
aaattgattgtacaaatatcatttctctaataaaaatt |
2843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 27578208 - 27578175
Alignment:
| Q |
20 |
aaattaattgtacaaatatcatttctctaatata |
53 |
Q |
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| T |
27578208 |
aaattaattgtacaaatatcatttctcaaatata |
27578175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20096446 - 20096494
Alignment:
| Q |
1 |
gttgtcaaaattttttaataaattaattgtacaaatatcatttctctaa |
49 |
Q |
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||||||||||| || | ||||| ||||| |||||||||||||||||||| |
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| T |
20096446 |
gttgtcaaaatattatcataaaataattatacaaatatcatttctctaa |
20096494 |
T |
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