View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_low_28 (Length: 231)
Name: NF3845_low_28
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 6489060 - 6489278
Alignment:
| Q |
1 |
ttaagcccagcagatttcatcgctttttctcccaacttctcagtggcgaggtcgcgaagatctacaaagttcacaacaggcaaagaaaagtctctaagaa |
100 |
Q |
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| T |
6489060 |
ttaagcccaacatatttcatcgctttttctcccaacttctcagtggcgaggccgcgacgatctacaaagttcacaacaggaaaagaaaagtctctaagaa |
6489159 |
T |
|
| Q |
101 |
gcttgtccacatcctctttgatctcaacaccaacaa-------attttcgttgcccagaaacgcaacaagtgatttcaggacgaacgaggcgtgtaggat |
193 |
Q |
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| T |
6489160 |
gcttgtccacatcctctttgatcccaacaccaacaaacttgttattttcgttgcccagaaacgcaacaagcgatttcgggacgaacgaggcatgtaggat |
6489259 |
T |
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| Q |
194 |
ttggaaaacaaggcattct |
212 |
Q |
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||||||||||||||||||| |
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| T |
6489260 |
ttggaaaacaaggcattct |
6489278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 51947230 - 51947011
Alignment:
| Q |
1 |
ttaagcccagcagatttcatcgctttttctcccaacttctcagtggcgaggtcgcgaagatctacaaagttcacaacaggcaaagaaaagtctctaagaa |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||| ||||||||| ||||||||||||||||||||| |
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| T |
51947230 |
ttaagcccagcagatttcatcgctttctctcccaacttctcagcggcgaggtaacgaagatccacaaaattcacaacaagcaaagaaaagtctctaagaa |
51947131 |
T |
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| Q |
101 |
gcttgtccacatcctctttgatctcaacaccaacaa-------attttcgttgcccagaaacgcaacaagtgatttcaggacgaacgaggcgtgtaggat |
193 |
Q |
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| T |
51947130 |
gcttgtccatgtcctctctgatcccaacaccaacaaacttgttattttcgttgcccagaaacgcaacaagcgatttcgggacgaacgaggcgtgtaggat |
51947031 |
T |
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| Q |
194 |
ttggaaaacaaggcattctc |
213 |
Q |
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| T |
51947030 |
ttggaaaacaaggcattctc |
51947011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 24183513 - 24183424
Alignment:
| Q |
49 |
aggtcgcgaagatctacaaagttcacaacaggcaaagaaaagtctctaagaagcttgtccacatcctctttgatctcaacaccaacaaat |
138 |
Q |
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|||| |||||| || |||||||| ||||| |||||| |||||||||||||||| |||||||||||| || |||||||||||||| |
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| T |
24183513 |
aggttgcgaagttcaacaaagttagcaacaaccaaagagtagtctctaagaagcttacccacatcctcttcgacaccaacaccaacaaat |
24183424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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