View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_low_6 (Length: 408)
Name: NF3845_low_6
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 390
Target Start/End: Complemental strand, 4182197 - 4181807
Alignment:
| Q |
2 |
tatgagccatcaactttgaatagtcaaattgagtctttcttgttcttgtgttgagacgtcgaaggaattaattatatgcattacatccatatcaacattt |
101 |
Q |
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| T |
4182197 |
tatgagccatcaactatgaatagtcaaattgagtttttcttgtttttgtgttgagacgtcgaaggaattaattatatgcaggagatccatattaacattt |
4182098 |
T |
|
| Q |
102 |
ctcacactccctaacaaatcaactgggtattagaaagacaaaatatcgagaccaatttcaacattataaaactttgcaaaaactagaaaaagcacaagac |
201 |
Q |
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| T |
4182097 |
ctcacactccctaacaaatcaactgggtattagaaacacaaaatatagagaccaattttaacattataaaactttgcaaaaactagaaaaagcacaagac |
4181998 |
T |
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| Q |
202 |
taaatttacaaacgaatatatttga--annnnnnnnngttgtcaataagaaatattattaaataaatatataagtaaaatcgattgtcagttttttcgtg |
299 |
Q |
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| T |
4181997 |
taaatttacaaacgaatatatttgattttttttttttgttgtgaataagaaatattattaaataaaaatataagtaaaaccgaccgtcagtgttttcgtg |
4181898 |
T |
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| Q |
300 |
aatatgactcaattacatctaatatgtggtgggttaatattcaaactttaaattcttcacttattcaccttacaaggtgttatataacttg |
390 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4181897 |
aatatgactcaattgcatctaatatgtggtgggttaatattcaaactttaaattcttcacttattcaccttacaaggtgttatataacttg |
4181807 |
T |
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