View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3845_low_9 (Length: 355)

Name: NF3845_low_9
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3845_low_9
NF3845_low_9
[»] chr7 (2 HSPs)
chr7 (15-344)||(38310960-38311287)
chr7 (240-285)||(44533582-44533627)
[»] chr6 (2 HSPs)
chr6 (226-276)||(6445326-6445376)
chr6 (235-285)||(344395-344445)
[»] chr5 (3 HSPs)
chr5 (224-272)||(13298021-13298070)
chr5 (236-277)||(15259749-15259790)
chr5 (284-320)||(13298027-13298063)
[»] chr3 (2 HSPs)
chr3 (236-285)||(31750952-31751001)
chr3 (236-285)||(25199246-25199295)
[»] chr1 (4 HSPs)
chr1 (224-267)||(14465062-14465106)
chr1 (236-276)||(28552052-28552092)
chr1 (286-320)||(14465070-14465104)
chr1 (241-277)||(48103929-48103965)
[»] chr2 (2 HSPs)
chr2 (224-285)||(25993668-25993730)
chr2 (239-285)||(29981754-29981800)
[»] chr8 (2 HSPs)
chr8 (240-285)||(2954101-2954146)
chr8 (236-277)||(25106757-25106798)
[»] chr4 (3 HSPs)
chr4 (240-285)||(54153484-54153529)
chr4 (236-272)||(31310658-31310694)
chr4 (240-272)||(32558860-32558892)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 344
Target Start/End: Complemental strand, 38311287 - 38310960
Alignment:
Q  15 gaaagatgggaaacgatgttcttgttttgtcaaaaaccaatcatgtggaaaagatgttcttattttgtcaagcatcactttaaaatatatatattcatta 114  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38311287 gaaagatgggtaaggatgttcttgttttgtcaaaaaccaatcatgtggaaaagatgttcttattttgtcaagcatcactttaaaatatctatattcatta 38311188  T
Q  115 ttgtttttcctacttcacatttacacgtgactgaaataaaaggaaggaaagattactttcgtcctcctttaacttaattttagacaacaatttcgnnnnn 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||         
T  38311187 ttgtttttcctacttcacatttacacgtgactgaaataaaaggaaggaaaaattactttcgtcctcctttaacttaattttaaacaacaatttcg--ttt 38311090  T
Q  215 nnnnnaatttcattttcgtcctttgatcaatttacatatgaattttcaagatttaaatctatggttatattgtccttttaatcaattttcatatgaattt 314  Q
         |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38311089 tttttaatttcattttcgtcctttgatcaatttacatatgaattttcaaaatttaaatctatggttatattgtccttttaatcaattttcatatgaattt 38310990  T
Q  315 tcaagacacaagtctacagttttatatgat 344  Q
    ||||||||||||||||||||||||||||||    
T  38310989 tcaagacacaagtctacagttttatatgat 38310960  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 44533582 - 44533627
Alignment:
Q  240 atcaatttacatatgaattttcaagatttaaatctatggttatatt 285  Q
    |||||||| |||||| |||||||||||| |||||||||||| ||||    
T  44533582 atcaatttgcatatggattttcaagattcaaatctatggttttatt 44533627  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 6445326 - 6445376
Alignment:
Q  226 attttcgtcctttgatcaatttacatatgaattttcaagatttaaatctat 276  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||    
T  6445326 attttcgtcctttgatcaatttgcatatgaattttcaaaattttaatctat 6445376  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 344395 - 344445
Alignment:
Q  235 ctttgatcaatttacatatgaattttcaagatttaaatctatggttatatt 285  Q
    |||||||||||||| ||||||||||||||||||||||| ||| ||| ||||    
T  344395 ctttgatcaatttatatatgaattttcaagatttaaatttatagttttatt 344445  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 13298021 - 13298070
Alignment:
Q  224 tcattttcgtccttt-gatcaatttacatatgaattttcaagatttaaat 272  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  13298021 tcatttttgtccttttgatcaatttacatatgaattttcaagattcaaat 13298070  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 15259749 - 15259790
Alignment:
Q  236 tttgatcaatttacatatgaattttcaagatttaaatctatg 277  Q
    ||||| |||||| |||||||||||| ||||||||||||||||    
T  15259749 tttgaacaatttgcatatgaatttttaagatttaaatctatg 15259790  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 13298027 - 13298063
Alignment:
Q  284 ttgtccttttaatcaattttcatatgaattttcaaga 320  Q
    |||||||||| |||||||| |||||||||||||||||    
T  13298027 ttgtccttttgatcaatttacatatgaattttcaaga 13298063  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 31751001 - 31750952
Alignment:
Q  236 tttgatcaatttacatatgaattttcaagatttaaatctatggttatatt 285  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||| ||||    
T  31751001 tttgattaatttgcatatgaattttcaagattcaaatctatggttttatt 31750952  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 25199246 - 25199295
Alignment:
Q  236 tttgatcaatttacatatgaattttcaagatttaaatctatggttatatt 285  Q
    |||||||||||| |||||||||||| |||||| |||||||| ||| ||||    
T  25199246 tttgatcaatttgcatatgaatttttaagattcaaatctatagttttatt 25199295  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 14465062 - 14465106
Alignment:
Q  224 tcattttcgtccttt-gatcaatttacatatgaattttcaagatt 267  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    
T  14465062 tcattttcgtccttttgatcaattttcatatgaattttcaagatt 14465106  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 28552052 - 28552092
Alignment:
Q  236 tttgatcaatttacatatgaattttcaagatttaaatctat 276  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  28552052 tttgatcaatttacatatgaatttttaagattcaaatctat 28552092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 320
Target Start/End: Original strand, 14465070 - 14465104
Alignment:
Q  286 gtccttttaatcaattttcatatgaattttcaaga 320  Q
    |||||||| ||||||||||||||||||||||||||    
T  14465070 gtccttttgatcaattttcatatgaattttcaaga 14465104  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 48103929 - 48103965
Alignment:
Q  241 tcaatttacatatgaattttcaagatttaaatctatg 277  Q
    |||||||||||||||||||| |||||| |||||||||    
T  48103929 tcaatttacatatgaattttgaagattcaaatctatg 48103965  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 25993668 - 25993730
Alignment:
Q  224 tcattttcgtccttt-gatcaatttacatatgaattttcaagatttaaatctatggttatatt 285  Q
    ||||||||||| ||| |||||||||||||| |||||| ||| |||||||| ||||||| ||||    
T  25993668 tcattttcgtctttttgatcaatttacataagaatttccaatatttaaatgtatggttttatt 25993730  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 29981754 - 29981800
Alignment:
Q  239 gatcaatttacatatgaattttcaagatttaaatctatggttatatt 285  Q
    ||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  29981754 gatcaatctgcatatggattttcaagatttaaatctatggttttatt 29981800  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 2954101 - 2954146
Alignment:
Q  240 atcaatttacatatgaattttcaagatttaaatctatggttatatt 285  Q
    |||||||||||||| ||||||||||||| |||| ||||||| ||||    
T  2954101 atcaatttacatataaattttcaagattcaaatttatggttttatt 2954146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 25106798 - 25106757
Alignment:
Q  236 tttgatcaatttacatatgaattttcaagatttaaatctatg 277  Q
    |||||||||||| |||||| ||||||||||||||||| ||||    
T  25106798 tttgatcaatttgcatatggattttcaagatttaaatatatg 25106757  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 54153484 - 54153529
Alignment:
Q  240 atcaatttacatatgaattttcaagatttaaatctatggttatatt 285  Q
    |||||||||||||| ||||||||||||| |||| ||||||| ||||    
T  54153484 atcaatttacatataaattttcaagattcaaatatatggttttatt 54153529  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 31310658 - 31310694
Alignment:
Q  236 tttgatcaatttacatatgaattttcaagatttaaat 272  Q
    |||||||||||| |||||| |||||||||||||||||    
T  31310658 tttgatcaatttgcatatgtattttcaagatttaaat 31310694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 32558860 - 32558892
Alignment:
Q  240 atcaatttacatatgaattttcaagatttaaat 272  Q
    |||||||||||||||||||||||| ||||||||    
T  32558860 atcaatttacatatgaattttcaatatttaaat 32558892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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