View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_high_12 (Length: 310)
Name: NF3846_high_12
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 53044603 - 53044329
Alignment:
| Q |
15 |
gaagtgtgatgctggctatttgaagcatatgatagaatatagctcttgtgcatttaagtttctcattttgatgatcatctttagaatggggtagagtttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044603 |
gaagtgtgatgctggctatttgaagcatatgatagaatatagctcttgtgcatttaagtttctcattttgatgatcatctttagaatggggtagagtttt |
53044504 |
T |
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| Q |
115 |
gagaatatagtgattggaattctaaagattctcccactaagagaaatcaaaaatacataggggatataagaccactgaaaaattaaatataatactgata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044503 |
gagaatatagtgattggaattctaaagattctcccactaagagaaatc--aaatacataggggatataagaccactgaaaaattaaatataatactgata |
53044406 |
T |
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| Q |
215 |
aaaattgcatcatgagatatcagttgtgatgagttatttgatataaaatgtattcgagtacttgtaaatgtcccgtg |
291 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044405 |
aaaattgcatcatgagatatcagttgcgatgagttatttgatataaaatgtattcgagtacttgtaaatgtcccgtg |
53044329 |
T |
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