View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3846_high_18 (Length: 240)
Name: NF3846_high_18
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_high_18 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 33358838 - 33358615
Alignment:
| Q |
23 |
ggacaaacagaaaagaagtcgccaaaagtattgaatgagagattctgagagtgcgattactatattt---------attgttctggtggtgnnnnnnncg |
113 |
Q |
| |
|
|||||||||||| |||| |||||||| ||| || ||||||||||||||||||| ||||||||||||| |||||| | |||||| || |
|
|
| T |
33358838 |
ggacaaacagaacagaaatcgccaaa-gtactgtatgagagattctgagagtgtgattactatattttttatatttattgtttttgtggtgtttttttcg |
33358740 |
T |
|
| Q |
114 |
tcttctgttaaccaaagggcgacattgttggcagccggaggcaagcacgataggctagcgggaaccaaatattgtggtgacggtgctatggatacttttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33358739 |
tcttctgttaaccaaagggcgacattgttggcagccggaggcaagcacgataggctagcgggaaccaaatattgtggtgacggtgctatggatac--ttt |
33358642 |
T |
|
| Q |
214 |
ctacagtttatttcttccttttttctt |
240 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
33358641 |
ctacagtttatttcttccttttttctt |
33358615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 41475247 - 41475343
Alignment:
| Q |
112 |
cgtcttctgttaaccaaagggcgacattgttggcagccggaggcaagcacgataggctagcgggaaccaaatattgtggtgacggtgctatggatac |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41475247 |
cgtcttctgttaaccaaagagcgacattgttggccgccggaggcaagcacaataggctagcgggaaccaaatattgtggtgacggtgctatggatac |
41475343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 10209106 - 10208891
Alignment:
| Q |
23 |
ggacaaacagaaaagaagtcgccaaaagtattgaatgagagattctgagagtgcgattactat-------atttattgttctggtggtgnnnnnnncgtc |
115 |
Q |
| |
|
||||||||||||||||| |||||||| ||| | ||||||||||||||||||| ||||||||| |||||||||| | | ||| |||| |
|
|
| T |
10209106 |
ggacaaacagaaaagaaatcgccaaa-gtacggtatgagagattctgagagtgtgattactattttttatatttattgtttttgctgtgtttttttcgtc |
10209008 |
T |
|
| Q |
116 |
ttctgttaaccaaagggcgacattgttggcagccggaggcaagcacgataggctagcgggaaccaaatattgtggtgacggtgctatggatactttttct |
215 |
Q |
| |
|
|||||||||| |||| |||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10209007 |
ttctgttaacaaaagagcgacactgttggccgccggaggtaagcacgataggctaccgggaaccaaatattgtggtgacggtgctatggatac--tttct |
10208910 |
T |
|
| Q |
216 |
acagtttatttcttccttt |
234 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
10208909 |
acggtttatttcttccttt |
10208891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University