View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3846_high_19 (Length: 240)
Name: NF3846_high_19
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 46360509 - 46360307
Alignment:
| Q |
15 |
catagggtttttatggtttaaacttggtagtgtaatgctcactccatgcaatataatgttgtttatgagtgtgtgatgagcaattcggcgatgaatcata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46360509 |
catagggtttttatggtttaaacttggtagtataatgctcactccatgcaat-----gttgtttatgagtgtgtgatgagcaattcggcgatgaatcata |
46360415 |
T |
|
| Q |
115 |
ttgcattcatgtaaacagcattctctgtctagaatgttttgtccaaacaccaaaagcagcctagaagacagtgattccacatgcatatataaaattgatt |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46360414 |
ttgcattcatgtaaacagcattctgtgtctagaatgttttgtccaaacaccaaaagcagcctagaagacagtgattccacatgcatatataaaattgatt |
46360315 |
T |
|
| Q |
215 |
gacatact |
222 |
Q |
| |
|
|||||||| |
|
|
| T |
46360314 |
gacatact |
46360307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 44461680 - 44461499
Alignment:
| Q |
15 |
catagggtttttatggtttaaacttggtagtgtaatgctcactccatgcaatataatgttgtttatgagtgtgtgatgagcaattcggcgatgaatcata |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44461680 |
catagggtttttatgatttaaacttggtagtgtaatgctcactccatgcaat-----gttgtttatgagtgtgtgatgagcaattcggcgatgaattata |
44461586 |
T |
|
| Q |
115 |
ttgcattcatgtaaacagcattctctgtctagaatgttttgtccaaacaccaaaagcagcctagaagacagtgattccacatgcata |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44461585 |
ttgcattcatgtaaacagcattctctgtctagaatgttttgtccaaacaccaaaagcagcctagaagaaagtgattccacatgcata |
44461499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 44469213 - 44469032
Alignment:
| Q |
15 |
catagggtttttatggtttaaacttggtagtgtaatgctcactccatgcaatataatgttgtttatgagtgtgtgatgagcaattcggcgatgaatcata |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44469213 |
catagggtttttatgatttaaacttggtagtgtaatgctcactccatgcaat-----gttgtttatgagtgtgtgatgagcaattcggcgatgaattata |
44469119 |
T |
|
| Q |
115 |
ttgcattcatgtaaacagcattctctgtctagaatgttttgtccaaacaccaaaagcagcctagaagacagtgattccacatgcata |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44469118 |
ttgcattcatgtaaacagcattctctgtctagaatgttttgtccaaacaccaaaagcagcctagaagaaagtgattccacatgcata |
44469032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 44452285 - 44452238
Alignment:
| Q |
19 |
gggtttttatggtttaaacttggtagtgtaatgctcactccatgcaat |
66 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
44452285 |
gggtttttatcatttaaacttggtagcgtaatgcgcactccatgcaat |
44452238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University