View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_high_2 (Length: 572)
Name: NF3846_high_2
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 135 - 572
Target Start/End: Complemental strand, 32122762 - 32122324
Alignment:
| Q |
135 |
aaccatttattatgttagattttccttcaataattccagtttttctgtgttttccatcataaattttgactatgttaatattttagacaaattggcttgt |
234 |
Q |
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| T |
32122762 |
aaccatttattatgttagattatccttcaataattccagtttttctgtgttttccatcataaattttgactatgttaatattttagacaaattggcttgt |
32122663 |
T |
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| Q |
235 |
taagtttgagtaatcggaaaaatgacattttgtgtttatagttcttaaatggtct-ggttgttgttatcatagggtaattttttgtttagagttgacaaa |
333 |
Q |
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| T |
32122662 |
taagtttgagtaatcggaaaaatgacattttgtgtttatagttcttaaatggtcttggttgttgttatcatagggtaattttttgtttagagttgacaaa |
32122563 |
T |
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| Q |
334 |
gcacacatttgcaaaagaatatacatatacacaaactaacaaattagggtttagggtcaaatttcatactctcttgactccaattcaaaagaagcattag |
433 |
Q |
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| T |
32122562 |
gcacacatttgcaaaagaatatacatatacacaaactaacaaattagggtttagggtcaaatttcatactctcttgactccgattcaaaagaagcattag |
32122463 |
T |
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| Q |
434 |
cataatattaagttctagcagtggaagtagtattctttatgggaaggtgaatcatcacatgccatttgactcttttcaggataaaataaaaagaaattat |
533 |
Q |
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| T |
32122462 |
cataatattaagttctagcagtggaagtagtattctttatgggaaggtgaatcatcacatgccatttgactcttttcaggataaaataaaaagaaatgat |
32122363 |
T |
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| Q |
534 |
gttttaacatcaaaattttgatgtcaaatacggtgccct |
572 |
Q |
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| T |
32122362 |
gttttaacatcaaaattttgatgtcaaatacggtgccct |
32122324 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 527 - 564
Target Start/End: Original strand, 18433662 - 18433699
Alignment:
| Q |
527 |
aaattatgttttaacatcaaaattttgatgtcaaatac |
564 |
Q |
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| T |
18433662 |
aaattatattttaacatcaaaattttgatgtcaaatac |
18433699 |
T |
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