View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_high_20 (Length: 238)
Name: NF3846_high_20
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41223369 - 41223150
Alignment:
| Q |
1 |
cacagcaaaaactcaagctgtgatggactggtctcaaatctcaagtctcaatctgtggttttggcaacgtcaccataaaaaacacagacacacaaaagta |
100 |
Q |
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| T |
41223369 |
cacagcaaaaactcaagctgtgatggactggtctcaaatctcaagtctcaatctgtggttttggcaacgtcaccataaaaaacacagacacacaaaagta |
41223270 |
T |
|
| Q |
101 |
ccacttttgtctccttgttcaacaaggattaccatcattcagtccaaagtgtagcttcacaaacaaaatactcagagggagagatttgatccctttgtga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
41223269 |
ccacttttgtctccttgttcaacaaggattaccatcattcagtccaaagtgtagcttcacaaagaaaatactcagagggagagatttgat-cctttgtga |
41223171 |
T |
|
| Q |
201 |
tcctatccggttcgagtaatt |
221 |
Q |
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|||||||||||||||| |||| |
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| T |
41223170 |
tcctatccggttcgaggaatt |
41223150 |
T |
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