View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_high_25 (Length: 226)
Name: NF3846_high_25
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_high_25 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5056372 - 5056597
Alignment:
| Q |
1 |
acttgctcgctacaatttgaactgttcgcttaaaagtctaagttcatttagaaaggtgatgaactcacctggaaccatagaactgaaatcagcacagtat |
100 |
Q |
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| T |
5056372 |
acttgctcgctacaatttgaactgttcgcttaaaagtctaagttcatttagaaaggtgatgaactcacctggaaccatagaactgaaatcagcacaatat |
5056471 |
T |
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| Q |
101 |
gggaagagcctaatgaaagagcataaagatgtgagacaaattgatcaaaatgcagaagaaaaacctcttcactcattaaatggtttcaatgacacgacaa |
200 |
Q |
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| T |
5056472 |
gggaagagcctaatgaaagagcataaagatgtgagacaaattgatcaaaatgcagaagaaaaacctcttcactcattaaatggtttcaatgacacgacaa |
5056571 |
T |
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| Q |
201 |
atgcatcctcaaactcatcgattaaa |
226 |
Q |
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| T |
5056572 |
atgcatcctcaaactcatcgattaaa |
5056597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 5185784 - 5185718
Alignment:
| Q |
43 |
ttcatttagaaaggtgatgaactcacctggaaccatagaactgaaatcagcacagtatgggaagagc |
109 |
Q |
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|||||||||||||| ||||| | | ||| | |||||||||||||||||||||| ||| |||||||| |
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| T |
5185784 |
ttcatttagaaaggaaatgaattgagctgtagccatagaactgaaatcagcacaatataggaagagc |
5185718 |
T |
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