View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3846_high_7 (Length: 434)
Name: NF3846_high_7
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 15637118 - 15636693
Alignment:
| Q |
1 |
atgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaatttacacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15637118 |
atgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagctttcgatatcagaaatcattcaaatttacacaa |
15637019 |
T |
|
| Q |
101 |
gaaggcgatgcgaaaggaatgataaacgatcgtttacannnnnnnnnnnnatagatgtttcattgttatttttcgcaagatggtgatgatatatatcgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15637018 |
gaaggcgatgcgaaaggaatgataaacgatcgtttagattttttgcttttacagatgtttcattgttatttttcacaagatggtgatgatatatatcgag |
15636919 |
T |
|
| Q |
201 |
cttatatgcat----attcttttgaattaataaatatatgtaaatattttcacnnnnnnn----atcaatatcaatcctatcctattgaggagaacatta |
292 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
15636918 |
cttatatgcatgcatattcttttgaattaataaatatatgcaaatatgttcactttttttttttatcaatatcaatcctatcctcatgaggagaacatta |
15636819 |
T |
|
| Q |
293 |
tttttaaattctgaagtgaccaatttgagaatttaagtatctgtttctctgactctaatagcaactaagagtatcaacattcaagagcaaaatgttttgt |
392 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15636818 |
tttttgaatcctaaagtgaccaatttgagaatttaagtatctgtttctctgactctaatagcaactaagagtatcaacattcaagagcaaaatgttttgt |
15636719 |
T |
|
| Q |
393 |
aacccttatttgatatgttatgttat |
418 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15636718 |
aacccttatttgatatgttatgttat |
15636693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 15587212 - 15587077
Alignment:
| Q |
1 |
atgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaatttacacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15587212 |
atgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaatttacacaa |
15587113 |
T |
|
| Q |
101 |
gaaggcgatgcgaaaggaatgataaacgatcgttta |
136 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
15587112 |
gaaggtgatgggaaaggaatgataaacgatcgttta |
15587077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15596161 - 15596088
Alignment:
| Q |
1 |
atgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgat |
74 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||| | |||||| |
|
|
| T |
15596161 |
atgcatgtggattacgatacaagtcaaatagattggttcaagggtatagacctgcggcaagtccatcctttgat |
15596088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 15645784 - 15645691
Alignment:
| Q |
1 |
atgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaattt |
94 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||| | |||||| | | || ||||||||||| |
|
|
| T |
15645784 |
atgcatgtggattaagatacaagtcaaatcgattggttaaagggtatagacctgtggcaagtccatcctttgattttaacaagcattcaaattt |
15645691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 418
Target Start/End: Complemental strand, 15587072 - 15587041
Alignment:
| Q |
387 |
ttttgtaacccttatttgatatgttatgttat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15587072 |
ttttgtaacccttatttgatatgttatgttat |
15587041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University