View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_low_1 (Length: 579)
Name: NF3846_low_1
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Complemental strand, 15357564 - 15357012
Alignment:
| Q |
17 |
gatatgatcttctgcgcaataccaaatttccttttcattgtaccccttagtaatatgtattcttgccttatttttcctgtgtcataaattgaaacaatag |
116 |
Q |
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| T |
15357564 |
gatatgatcttctgcgcaataccaaatttccttttcattgtaccccttagtaatatgtattcttgccttatttttcctgtgtcataaattgaaacaatag |
15357465 |
T |
|
| Q |
117 |
ataattttatggataatttttcaaaaattaaaattcaaaagtgtgcttaacaaaaatagattagcaaataatatgctctatgtaacaccaacatttcata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15357464 |
ataattttatggataatttttcaaaaattaaaattcaaaagtgtgcttaacaaaaatagattagcaaataatatgctctatgtaacaccaacatttcata |
15357365 |
T |
|
| Q |
217 |
ttaaagtcatgtccacgtaacaccgatacatataattttgtttatttattttcttaaattaatacagatgttgatgtgttagtatcgtgacatgtattcg |
316 |
Q |
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| T |
15357364 |
ttaaactcatgtccacgtaacaccgatacatatagttttgtttatttattttcttaaattaatacagatgttgatgtgttagtatcgtgacatgtattcg |
15357265 |
T |
|
| Q |
317 |
tgtacatattaatacttcatagttcgtaattcatatttcctaaaactaaaaacttgataaaatgataaaatacaagagaatcataccctatatttaacag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15357264 |
tgtacatattaatacttcatagttcgtaattcatatttcctaaaactaaaaacttgataaaatgataaaatacaagagaatcataccctatatttaacag |
15357165 |
T |
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| Q |
417 |
gctttagtttcgattctctctctgcatgattcataccagactttctagcattcaccactctctctaccattttacttcctttaaaatgtgatctactttc |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15357164 |
gctttagtttcgattctctctctgcatgattcataccagactttctagcattcaccactttctctaccattttacttcctttaaaatgtgatctactttc |
15357065 |
T |
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| Q |
517 |
attatttcctgcagctagagtaaatgcttctttttgagtcttcacattcttct |
569 |
Q |
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| T |
15357064 |
attatttcctgcagctagagtaaatgcttctttttgtgtcttcacattcttct |
15357012 |
T |
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