View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_low_13 (Length: 309)
Name: NF3846_low_13
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 50 - 301
Target Start/End: Complemental strand, 11616034 - 11615777
Alignment:
| Q |
50 |
aatgtatcaggtgatagatttcaagaaaaatcaaatgcatcgtgttaacttttggcttacaccaaagaatgaaaacaaggaccgaaaagcttcatctttt |
149 |
Q |
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| T |
11616034 |
aatgtatcaggtgttagattttaaggaaaatcaaatgcatcgtgctaacttttggcttacaccaaagaatcaaaacaaggaccaaaaagcttcatctttt |
11615935 |
T |
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| Q |
150 |
ctcaataatgaagttgcaagtcttctggattccatatctgtttcgtcttcgtcttcgt------cttcatcttcttcttgggatgaatataagcctgtga |
243 |
Q |
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| T |
11615934 |
ctcaataatgaagtagcaagtcttctggattccatatctgtttcgtcttcgtcttcgtcttcctcttcatcttcttcttgggatgaatataagcctgtga |
11615835 |
T |
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| Q |
244 |
caaatgaagacaacacaagtcaacttgccccggatccacttttgcttaaacctatgct |
301 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11615834 |
taaataaagacaacacaagtcaacttgcccctgatccacttttgcttaaacctatgct |
11615777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 11605220 - 11605289
Alignment:
| Q |
50 |
aatgtatcaggtgatagatttcaagaaaaatcaaatgcatcgtgttaacttttggcttacaccaaagaat |
119 |
Q |
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| T |
11605220 |
aatgtatcaggtgctagatttctacgaaaatcaaatgcatcgtacaaaattttggcttacacccaagaat |
11605289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 8671695 - 8671757
Alignment:
| Q |
50 |
aatgtatcaggtgatagatttcaagaaaaatcaaatgcatcgtgttaacttttggcttacacc |
112 |
Q |
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| T |
8671695 |
aatgtatcaggtgctagatttctaggaaaatcaaatgcatcgtgctaaatattggcttgcacc |
8671757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 8715396 - 8715343
Alignment:
| Q |
50 |
aatgtatcaggtgatagatttcaagaaaaatcaaatgcatcgtgttaacttttg |
103 |
Q |
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| T |
8715396 |
aatgtatcaagtgctagatttctaggaaaatcaaatgcatcgtgttaaattttg |
8715343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 35078875 - 35078918
Alignment:
| Q |
50 |
aatgtatcaggtgatagatttcaagaaaaatcaaatgcatcgtg |
93 |
Q |
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| T |
35078875 |
aatgtatcaggtgctagatttctaggaaaatcaaatgcatcgtg |
35078918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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