View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3846_low_14 (Length: 299)
Name: NF3846_low_14
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 23346897 - 23347167
Alignment:
| Q |
19 |
catatagtagaatttttggattcattatcaatttggcacgtatggacagaatttttctgttattctatcttttatttgggctatgatacgtttgtcacag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23346897 |
catatagtagaatttttggattcattatcaatttggcacgtatagacagaatttttctgttattctatcttttatttgggccatgatacgtttgtcacag |
23346996 |
T |
|
| Q |
119 |
ttaatcaatgatatctatcctttcggaattacaagtgttctcttttaggtgacttagatgagaggtagcctaattactaagcagattagtagaatgcaac |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23346997 |
ttaatcaatgatatctatcatttcggaattacaagttttctcttttaggtgactgagatgagaggtagcctaattactaagcagattagtagaatgcaac |
23347096 |
T |
|
| Q |
219 |
atgacagaatatgttgaacttataccctaattgctgtgttaaaaacaattatagatattctgtaagtataat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23347097 |
atgacagaatatgttgaacttataccctaattgc-gtgttaaaaacaattatagatattctgtaagtataat |
23347167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University