View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3846_low_16 (Length: 250)

Name: NF3846_low_16
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3846_low_16
NF3846_low_16
[»] chr4 (19 HSPs)
chr4 (6-153)||(53393686-53393833)
chr4 (64-153)||(54982373-54982462)
chr4 (63-153)||(2493480-2493571)
chr4 (64-143)||(19443255-19443334)
chr4 (72-143)||(25494118-25494189)
chr4 (64-143)||(1821278-1821357)
chr4 (64-143)||(34031697-34031776)
chr4 (64-153)||(38044465-38044555)
chr4 (107-153)||(49263380-49263426)
chr4 (72-140)||(49299549-49299617)
chr4 (65-149)||(50721291-50721375)
chr4 (64-143)||(38840116-38840195)
chr4 (95-153)||(9089263-9089321)
chr4 (67-143)||(41502866-41502942)
chr4 (99-143)||(45666638-45666682)
chr4 (72-138)||(24073760-24073825)
chr4 (62-143)||(33889909-33889993)
chr4 (67-145)||(45635133-45635211)
chr4 (72-143)||(47944176-47944245)
[»] chr5 (13 HSPs)
chr5 (73-153)||(12436364-12436444)
chr5 (64-153)||(42673692-42673781)
chr5 (72-153)||(18412994-18413075)
chr5 (64-153)||(39585471-39585560)
chr5 (76-153)||(17201793-17201870)
chr5 (64-143)||(11991898-11991977)
chr5 (65-143)||(28620440-28620517)
chr5 (64-143)||(19804079-19804158)
chr5 (64-143)||(1583832-1583911)
chr5 (64-126)||(8544346-8544408)
chr5 (104-153)||(249176-249224)
chr5 (72-143)||(20202006-20202077)
chr5 (72-132)||(19133264-19133323)
[»] chr7 (10 HSPs)
chr7 (64-153)||(4567697-4567786)
chr7 (64-153)||(10534649-10534738)
chr7 (64-153)||(35792729-35792818)
chr7 (72-143)||(2271552-2271623)
chr7 (64-143)||(27723614-27723693)
chr7 (65-140)||(37124574-37124649)
chr7 (62-153)||(16197167-16197258)
chr7 (65-143)||(4678711-4678789)
chr7 (75-127)||(12394563-12394615)
chr7 (113-143)||(41690133-41690163)
[»] chr6 (7 HSPs)
chr6 (72-153)||(2437450-2437531)
chr6 (64-153)||(8049562-8049652)
chr6 (72-153)||(25056878-25056959)
chr6 (100-141)||(14093418-14093459)
chr6 (65-143)||(4666180-4666258)
chr6 (64-143)||(9353475-9353554)
chr6 (65-143)||(4184970-4185048)
[»] chr3 (11 HSPs)
chr3 (60-153)||(37030577-37030670)
chr3 (72-143)||(27817755-27817826)
chr3 (73-143)||(45667752-45667822)
chr3 (64-153)||(21934141-21934230)
chr3 (59-143)||(42735228-42735312)
chr3 (74-153)||(5493934-5494013)
chr3 (64-153)||(16237212-16237301)
chr3 (62-153)||(38750699-38750790)
chr3 (69-143)||(45646915-45646989)
chr3 (72-143)||(21915851-21915923)
chr3 (103-143)||(34823850-34823890)
[»] chr2 (15 HSPs)
chr2 (64-153)||(16806243-16806332)
chr2 (64-153)||(16845524-16845613)
chr2 (72-153)||(45273032-45273113)
chr2 (65-143)||(3309558-3309636)
chr2 (65-143)||(29408479-29408557)
chr2 (65-153)||(21252964-21253050)
chr2 (63-132)||(4316953-4317022)
chr2 (64-143)||(32113134-32113213)
chr2 (65-143)||(27746816-27746894)
chr2 (65-143)||(7485913-7485991)
chr2 (65-143)||(25965465-25965543)
chr2 (106-143)||(1397778-1397815)
chr2 (111-152)||(38588974-38589015)
chr2 (10-50)||(150002-150043)
chr2 (66-122)||(1397830-1397886)
[»] chr8 (13 HSPs)
chr8 (72-153)||(32234005-32234086)
chr8 (64-143)||(38401866-38401945)
chr8 (64-153)||(29315480-29315569)
chr8 (64-153)||(36682930-36683019)
chr8 (76-143)||(5871160-5871227)
chr8 (72-143)||(11087484-11087555)
chr8 (66-132)||(16599066-16599132)
chr8 (73-143)||(38457646-38457716)
chr8 (64-143)||(34146595-34146675)
chr8 (94-143)||(1530479-1530528)
chr8 (64-141)||(27232000-27232077)
chr8 (103-143)||(35970369-35970409)
chr8 (65-132)||(14896909-14896976)
[»] chr1 (11 HSPs)
chr1 (64-153)||(13254371-13254460)
chr1 (64-153)||(40518826-40518915)
chr1 (65-143)||(52415450-52415528)
chr1 (60-143)||(4671726-4671809)
chr1 (67-143)||(36319593-36319669)
chr1 (64-142)||(30280921-30280999)
chr1 (91-138)||(41116831-41116878)
chr1 (103-143)||(32769304-32769344)
chr1 (113-143)||(1394517-1394547)
chr1 (67-145)||(2656042-2656120)
chr1 (100-138)||(41116789-41116827)
[»] scaffold1327 (1 HSPs)
scaffold1327 (64-143)||(1098-1177)
[»] scaffold0005 (1 HSPs)
scaffold0005 (71-143)||(272045-272117)
[»] scaffold0475 (1 HSPs)
scaffold0475 (94-143)||(11185-11234)
[»] scaffold1986 (1 HSPs)
scaffold1986 (100-136)||(489-525)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 153
Target Start/End: Complemental strand, 53393833 - 53393686
Alignment:
Q  6 taataaacaattgttagttattaacttttctccaacaaattcatannnnnnnngtgcactctctcgtaacaaacaattatcgatattctaaattttgtgc 105  Q
    |||||||||||||| |||||||| ||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||| |||||||    
T  53393833 taataaacaattgtcagttattatcttttctccaacaaattcattttttttttgtgcactctctcgtaacaaacaattatcaatattctaaactttgtgc 53393734  T
Q  106 acatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53393733 acatctttttaattattttaagtcaatataaaaattatattgatgaaa 53393686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 54982373 - 54982462
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| || ||||||||| |  || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54982373 ctctctcataccaaacaattgttaattttctaaatattgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 54982462  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 2493571 - 2493480
Alignment:
Q  63 actctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattatttt-aagtcaatataaaaattatattgatgaaa 153  Q
    |||||||| |||||||||||| || || || ||||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  2493571 actctctcataacaaacaattgtcaattttttaaatattatgcacatctttttaattattttaaagccaatataaaaattatattgatgaaa 2493480  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 19443255 - 19443334
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| |||||||||||| || || |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  19443255 ctctctcataacaaacaattgtcaattttctaaatattgagcacatctttttaattattgtaagtcaatataaaaattat 19443334  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 25494189 - 25494118
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||||||||| || || |||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  25494189 taacaaacaattgtcaattttctaaatatcgtgcacatctttttaattattttaagtcaatataaaaattat 25494118  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 1821278 - 1821357
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| |||||||||||| || || || ||||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  1821278 ctctctcataacaaacaattgtcaattttataaatattgtgcacatcattttaattattgtaagtcaatataaaaattat 1821357  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 34031697 - 34031776
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| ||| |||||||| || || || ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  34031697 ctctctcataataaacaattgtcaattttttaaatattgtgcacatctttttaattaatttaagtcaatataaaaattat 34031776  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 38044465 - 38044555
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttt-taattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||||||| |||||||| || || |||||||| || ||||||| |||| |||||||||| ||||| ||||||||||||||||||||||    
T  38044465 ctctctcgtaataaacaattgtcaattttctaaatattatgcacattttttttaattattttcagtcagtataaaaattatattgatgaaa 38044555  T

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Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 49263426 - 49263380
Alignment:
Q  107 catctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49263426 catctttttaattattttaagtcaatataaaaattatattgatgaaa 49263380  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 49299549 - 49299617
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaat 140  Q
    |||||||||||| |  || ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  49299549 taacaaacaattgttaattttctaaataatgtgcacatctttttaattattttaagtcaatataaaaat 49299617  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 50721375 - 50721291
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgat 149  Q
    |||||| ||||||| |||| || || || | ||| |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  50721375 tctctcataacaaataattgtcaatttttttaatattgtacacatctttttaattattttaagtcaatataaaaaatatattgat 50721291  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 38840116 - 38840195
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| ||| |||||||| || || | |||||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  38840116 ctctctcataagaaacaattgtcaatttcctaaatattgtgaacatctttttgattattttaagtcaatataaaaattat 38840195  T

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Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 9089263 - 9089321
Alignment:
Q  95 aaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  9089263 aaatattgggcacatatttttaattatcttaagtcaatataaaaattatattgatgaaa 9089321  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 41502942 - 41502866
Alignment:
Q  67 tctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||| |||||||||||| || || ||| |||| ||||||||| || |||||||| ||||||||||||||||||||||    
T  41502942 tctcataacaaacaattgtcaattttcgaaatattgtgcacaactctttaattaatttaagtcaatataaaaattat 41502866  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 45666682 - 45666638
Alignment:
Q  99 tttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  45666682 tttgtgcatatctttttaattattttaagtcaatataaaaattat 45666638  T

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Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 24073760 - 24073825
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaa 138  Q
    |||||||||||| || || |||||||| || |||||||||||| |||||||||||||||||||||||    
T  24073760 taacaaacaattgtcaattttctaaatattttgcacatctttt-aattattttaagtcaatataaaa 24073825  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 33889993 - 33889909
Alignment:
Q  62 cactctctcgtaacaaacaattatcgatattctaaatttt---gtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||| |||||||||||| || || || ||||| ||   |||||||||| |||||||| ||||||||||||||||||||||    
T  33889993 cactctctcataacaaacaattgtcaattttttaaatattattgtgcacatctctttaattaatttaagtcaatataaaaattat 33889909  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 45635133 - 45635211
Alignment:
Q  67 tctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatat 145  Q
    |||| |||||||||||| |  || |||||||| ||||||| |||| ||||||||||| ||||| | || ||||||||||    
T  45635133 tctcataacaaacaattttaaattttctaaatattgtgcatatctctttaattatttcaagtctagatcaaaattatat 45635211  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 47944176 - 47944245
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||||||||| || || || ||||| |||||||||||||||||| ||   |||||| |||||||||||||    
T  47944176 taacaaacaattgtcaattttttaaatattgtgcacatctttttaagta--gtaagtcgatataaaaattat 47944245  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 12436364 - 12436444
Alignment:
Q  73 aacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12436364 aacaaacaattatcaattttctaaatattgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 12436444  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 42673692 - 42673781
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| || || || ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42673692 ctctctcataacaaacaattgtcaattttttaaatattgtgcacatctttttaattatttaaagtcaatataaaaattatattgatgaaa 42673781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 18412994 - 18413075
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||||||||||| || || |||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  18412994 taacaaacaattgtcaattttctaaatattgtgcacatctttttcattattttaagtcgatttaaaaattatattgatgaaa 18413075  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 39585471 - 39585560
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| ||||||||| || |  || |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  39585471 ctctctcataacaaacatttgttaattttctaaatattgtgcatatctttttagttattttaagtcaatataaaaattatattgatgaaa 39585560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 17201870 - 17201793
Alignment:
Q  76 aaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||||||| || || || ||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  17201870 aaacaattgtcaattttttaaatattgtgcgcacctttttaattattttaagtcaatataaaaattatattgatgaaa 17201793  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 11991898 - 11991977
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| |||||||||||| || || | ||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  11991898 ctctctcataacaaacaattgtcaatttcctaaatactgtgcacatatttttaattattttaagtcaatataaaaattat 11991977  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 28620517 - 28620440
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||||||||||||| || || || ||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  28620517 tctctcgtaacaaacaattgtcaattttttaaatattgtgcatat-tttttaattattttaagtcaatataaaaattat 28620440  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 19804158 - 19804079
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| | |||||||||| || || |||||||| ||||  |||| |||||||||||||||||||||||||||||||||    
T  19804158 ctctctcattacaaacaattgtcaattttctaaatattgtaaacatttttttaattattttaagtcaatataaaaattat 19804079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 1583911 - 1583832
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| |||||||||||| || || ||  |||| ||||||||||||||| ||||||||||| ||||||| ||||||||    
T  1583911 ctctctcataacaaacaattgtcaatttttgaaatattgtgcacatcttttaaattattttaaatcaatatcaaaattat 1583832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 8544346 - 8544408
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaa 126  Q
    ||||||| || ||||||||| || || |||||||| |||||||||||||||||||||||||||    
T  8544346 ctctctcatatcaaacaattgtcaattttctaaatattgtgcacatctttttaattattttaa 8544408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 249176 - 249224
Alignment:
Q  104 gcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  249176 gcacatctctttaattaatttaagtcaatat-aaaattatattgatgaaa 249224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 20202077 - 20202006
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||||||||| || || |||||||| ||||||| || |  |||||||||||||||| |||| ||||||||    
T  20202077 taacaaacaattttcaattttctaaatattgtgcatatatcattaattattttaagtctatatcaaaattat 20202006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 19133264 - 19133323
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaat 132  Q
    ||||||| |||| || || |||||||| |||||||||||| |||||||| |||||||||||    
T  19133264 taacaaataattttcaattttctaaatattgtgcacatctctttaatta-tttaagtcaat 19133323  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 4567786 - 4567697
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| |  || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4567786 ctctctcataacaaacaattgttaattttctaaatattgtgcacatctttttaattattttcagtcaatataaaaattatattgatgaaa 4567697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 10534649 - 10534738
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| || || || ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||    
T  10534649 ctctctcataacaaacaattgtcaattttttaaattttgtgcaaatctttttaattattgtaagtcaatataaaaattatgttgatgaaa 10534738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 35792729 - 35792818
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| || || ||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35792729 ctctctcataacaaacaattgtcaattttctagatattatgcacatctttttaattattttaagtcaatataaaaatgatattgatgaaa 35792818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 2271552 - 2271623
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2271552 taacaaacaattgtcaattttctaaatattgtgcacatctttttaattattttaagtcaatataaaaattat 2271623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 27723693 - 27723614
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| |||||||||||| || || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  27723693 ctctctcataacaaacaattgtcaattttctaaatattgtgcacatctttttaattattgtaagtcaatataaaaattat 27723614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 37124649 - 37124574
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaat 140  Q
    |||||| |||||||||||| || || ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  37124649 tctctcataacaaacaattgtcaattttctaaataatgtgcacatctttttaattattttaagtcaatataaaaat 37124574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 16197258 - 16197167
Alignment:
Q  62 cactctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||||| |||||||||||| || || || ||||| |||||||| |||||||||||||||||||| ||||| || |||||||| ||||||    
T  16197258 cactctctcataacaaacaattgtcaattttttaaatattgtgcacgtctttttaattattttaagttaatatcaagattatatttatgaaa 16197167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 4678789 - 4678711
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||||||||||||| || || |||||| | ||||||| |||| ||||||||||||||||| |||| ||||||||    
T  4678789 tctctcgtaacaaacaattttcaattttctaagtattgtgcatatctctttaattattttaagtctatatcaaaattat 4678711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 12394615 - 12394563
Alignment:
Q  75 caaacaattatcgatattctaaattttgtgcacatctttttaattattttaag 127  Q
    ||||||||| || || |||||||| |||||||||||||||| |||||||||||    
T  12394615 caaacaattgtcaattttctaaatattgtgcacatcttttttattattttaag 12394563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 41690163 - 41690133
Alignment:
Q  113 tttaattattttaagtcaatataaaaattat 143  Q
    |||||||||||||||||||||||||||||||    
T  41690163 tttaattattttaagtcaatataaaaattat 41690133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 2437450 - 2437531
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||||||||||| || || |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2437450 taacaaacaattgtcaattttctaaatattgtgcaaatctttttaattattttaagtcaatataaaaattatattgatgaaa 2437531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 8049652 - 8049562
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattct-aaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| || || || | |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8049652 ctctctcataacaaacaattgtcaatttttttaaatattgtgcacctctttttaattattttaagtcaatataaaaattatattgatgaaa 8049562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 25056959 - 25056878
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||||| ||||| || || || ||||| || ||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  25056959 taacaagcaattgtcaattttttaaatattatgcacacatttttaattattttaagtcaatataaaaattatattgatgaaa 25056878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 14093418 - 14093459
Alignment:
Q  100 ttgtgcacatctttttaattattttaagtcaatataaaaatt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14093418 ttgtgcacatctttttaattattttaagtcaatataaaaatt 14093459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 4666258 - 4666180
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||| |||||||||||| || || || ||||| ||||||| |||| ||||||||||||||||| |||| ||||||||    
T  4666258 tctctcataacaaacaattttcaattttttaaatattgtgcatatctctttaattattttaagtctatatcaaaattat 4666180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 9353554 - 9353475
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| || ||||||||| || || |||||||| ||||||| || ||||||||||||||| ||| || ||||||||||    
T  9353554 ctctctcatatcaaacaattgtcaattttctaaatattgtgcatatttttttaattattttacgtcgatgtaaaaattat 9353475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 4185048 - 4184970
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||| |||||||||||| || || || ||||| || |||| || | ||||||||||||||||| |||| ||||||||    
T  4185048 tctctcataacaaacaattttcaattttttaaatattatgcatatttctttaattattttaagtctatatcaaaattat 4184970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 37030577 - 37030670
Alignment:
Q  60 tgcactctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||||||| |||||||||||| || || |||||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  37030577 tgcactctctcataacaaacaattgtcaattttctaaatattgtgtacatcttttcaattattttaagtcaatataaaaattaaattgatgaaa 37030670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 27817826 - 27817755
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27817826 taacaaacaattgtcaattttctaaatattgtgcacatctttttaattattttaagtcaatataaaaattat 27817755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 45667822 - 45667752
Alignment:
Q  73 aacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45667822 aacaaacaattgtcaattttctaaatattgtgcacatctttttaattattttaagtcaatataaaaattat 45667752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 21934141 - 21934230
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| |  || |||||||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  21934141 ctctctcataacaaacaattgttaattttctaaatattgtgcacatctctttaattaatttaagtcaatataaaaattatatggatgaaa 21934230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 42735228 - 42735312
Alignment:
Q  59 gtgcactctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||||||||||||||||| |||| || || || ||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  42735228 gtgcactctctcgtaacaaagaattgtcaattttttaaatattgtgcatgtctttttaattattttaagtcaatataaaaattat 42735312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 5494013 - 5493934
Alignment:
Q  74 acaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||||||||| || || || ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5494013 acaaacaattatcaattttttagatactatgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 5493934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 16237212 - 16237301
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| ||||||| |||| || || || ||||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||    
T  16237212 ctctctcataacaaataattgtcaattttttaaatattgtacgcatctttttaattattttaagtcaatataaaaattatgttgatgaaa 16237301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 38750699 - 38750790
Alignment:
Q  62 cactctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||||| |||||||||||| || || || ||||| | |||||||||| |||||||| ||||| |||||||||||||||||| |||||||    
T  38750699 cactctctcataacaaacaattgtctattttttaaatatcgtgcacatctctttaattaatttaaatcaatataaaaattatatcgatgaaa 38750790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 45646989 - 45646915
Alignment:
Q  69 tcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||| |||||||| || || |||||||| |||||| |||||||||||||||||||| ||||||| ||||||||    
T  45646989 tcgtaataaacaattgtcaattttctaaatattgtgcgcatctttttaattattttaaatcaatattaaaattat 45646915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 21915923 - 21915851
Alignment:
Q  72 taacaaacaattatcgatattct-aaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||||||||| || || | |||| |||||||||||| |||||||| ||||||||| ||||||||||||    
T  21915923 taacaaacaattatcaatttttttaaatattgtgcacatctctttaattaatttaagtcattataaaaattat 21915851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 34823850 - 34823890
Alignment:
Q  103 tgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  34823850 tgcacatctctttaattatttcaagtcaatataaaaattat 34823890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 16806243 - 16806332
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| || || |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  16806243 ctctctcataacaaacaattgtcaattttctaaatattgtggacatctatttaattattttaagtcaatataaaaattatattgatgaaa 16806332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 16845524 - 16845613
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| || || |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  16845524 ctctctcataacaaacaattgtcaattttctaaatattgtggacatctatttaattattttaagtcaatataaaaattatattgatgaaa 16845613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 45273032 - 45273113
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||||||||||| || || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45273032 taacaaacaattgtcaattttctaaatattgtgcacatcttttaaattattttaagtcaatataaaaattatattgatgaaa 45273113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 3309558 - 3309636
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||| |||||||||||| || || |||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  3309558 tctctcttaacaaacaattgtcaattttctaaatattgtgcacatctttttgattattttaagtcaatataaaaattat 3309636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 29408479 - 29408557
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||| |||||||||||| || || || ||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  29408479 tctctcataacaaacaattgtcaattttataaatattgtgcacatctttttaattactgtaagtcaatataaaaattat 29408557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 21253050 - 21252964
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||| ||||||||||||| |  || |||||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21253050 tctctagtaacaaacaattgttaattttctaaatatt-tacacatctttttaattattttaagtcaatat-aaaattatattgatgaaa 21252964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 4317022 - 4316953
Alignment:
Q  63 actctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaat 132  Q
    |||||||| |||||||||||| || || ||||||||  ||||||||| ||||||||||||||||||||||    
T  4317022 actctctcataacaaacaattgtcaattttctaaatagtgtgcacatttttttaattattttaagtcaat 4316953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 32113134 - 32113213
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| |||||||||||| || || || || || |||||||||||| |||| ||| ||||||||||||||||||||||    
T  32113134 ctctctcataacaaacaattgtcaattttttagatattgtgcacatctctttatttaatttaagtcaatataaaaattat 32113213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 27746894 - 27746816
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||| |||||||||||| || || |||||||| ||||||| | || ||||||||||||||||| |||| ||||||||    
T  27746894 tctctcctaacaaacaattttcaattttctaaatattgtgcatacctatttaattattttaagtctatatcaaaattat 27746816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 7485913 - 7485991
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||| |||||||| ||| |  || |||||||| ||||||| |||| ||||||||||||||||| |||| ||||||||    
T  7485913 tctctcataacaaacgattttgaattttctaaatattgtgcatatctctttaattattttaagtctatatcaaaattat 7485991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 25965465 - 25965543
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||| |||||||||||| || || |||||||| ||||||| |||| ||||||||||| |||||  ||| ||||||||    
T  25965465 tctctcataacaaacaattttcaattttctaaatattgtgcatatctctttaattatttgaagtctgtatcaaaattat 25965543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 1397815 - 1397778
Alignment:
Q  106 acatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  1397815 acatctttttaattattgtaagtcaatataaaaattat 1397778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 38588974 - 38589015
Alignment:
Q  111 tttttaattattttaagtcaatataaaaattatattgatgaa 152  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  38588974 ttttttattattttaaatcaatataaaaattatattgatgaa 38589015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 150002 - 150043
Alignment:
Q  10 aaacaattgttagttattaactttt-ctccaacaaattcata 50  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  150002 aaacaattgttagttattatcttttactccaacaaattcata 150043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 1397886 - 1397830
Alignment:
Q  66 ctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattatt 122  Q
    ||||| |||||||||||| || |  || ||||| |||||||||||||||||||||||    
T  1397886 ctctcataacaaacaattgtcaactttttaaatattgtgcacatctttttaattatt 1397830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 32234086 - 32234005
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    |||||||||||| || || |||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  32234086 taacaaacaattgtcaattttctaaatattgtgcacatctttttaattattttcggtcaatataaaaattatattgatgaaa 32234005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 38401945 - 38401866
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| |||||||||||| || |  |||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  38401945 ctctctcataacaaacaattgtcaactttctaaatattgtgcacatctttttaattaatttaagtcaatataaaaattat 38401866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 29315480 - 29315569
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| || || || ||||| | |||||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  29315480 ctctctcataacaaacaattgtcaattttttaaatatcgtgcacatctctttaattaatttaactcaatataaaaattatattgatgaaa 29315569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 36683019 - 36682930
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| |  || |||||||| ||| |||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  36683019 ctctctcataacaaacaattgttaattttctaaatattgcgcacatctctttaattaatttaagtcaatataaaaattatatggatgaaa 36682930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 5871227 - 5871160
Alignment:
Q  76 aaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||||| || || |||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  5871227 aaacaattgtcaattttctaaatattgtgcacatctttttaattattttaaggcaatataaaaattat 5871160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 11087555 - 11087484
Alignment:
Q  72 taacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||||||||| || || || ||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  11087555 taacaaacaattgtcaattttttaaatattgtgcacatctttttaattattttaaatcaatataaaaattat 11087484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 16599066 - 16599132
Alignment:
Q  66 ctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaat 132  Q
    ||||| ||||||| ||||||| || |||||||| |||||||||||| ||||||||||||||||||||    
T  16599066 ctctcataacaaataattatcaattttctaaatattgtgcacatctctttaattattttaagtcaat 16599132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 38457716 - 38457646
Alignment:
Q  73 aacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||||| || || || |||||  | |||||||||||| ||||||||||||||||||||||||||||    
T  38457716 aacaaacaattgtcaattttttaaatactatgcacatcttttaaattattttaagtcaatataaaaattat 38457646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 34146675 - 34146595
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattatttt-aagtcaatataaaaattat 143  Q
    ||||||| || ||||||||| |  || || ||||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  34146675 ctctctcatatcaaacaattgtgaattttttaaatattgtgtacatctttttaattattttaaagtcaatataaaaattat 34146595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 1530479 - 1530528
Alignment:
Q  94 taaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||| ||||||| ||||||||||||||||||  ||||||||||||||||    
T  1530479 taaatattgtgcagatctttttaattattttagatcaatataaaaattat 1530528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 27232077 - 27232000
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaatt 141  Q
    ||||||| |||||||||||| |  || |||||||| || |||| | ||||||||||| ||||||| ||||||||||||    
T  27232077 ctctctcataacaaacaattgttaattttctaaatattttgcatacctttttaattagtttaagtaaatataaaaatt 27232000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 35970409 - 35970369
Alignment:
Q  103 tgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  35970409 tgcatatctctttaattattttaagtcaatataaaaattat 35970369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 14896976 - 14896909
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaat 132  Q
    |||||| |||||||||||| || || |||||||| |||| ||||||| || ||||| |||||||||||    
T  14896976 tctctcataacaaacaattgtcaattttctaaatattgtacacatctcttcaattaatttaagtcaat 14896909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 13254371 - 13254460
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| || || || ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13254371 ctctctcataacaaacaattgtcaattttttaaatattatgcgcatctttttaattattttaagtcaatataaaaattatattgatgaaa 13254460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 40518826 - 40518915
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatattgatgaaa 153  Q
    ||||||| |||||||||||| |  || |||||||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  40518826 ctctctcataacaaacaattgttaattttctaaatattgtgcacatctctttaattaatttaagtcaatataaaaattatatggatgaaa 40518915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 52415528 - 52415450
Alignment:
Q  65 tctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    |||||| |||||||||||| || || |||||||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  52415528 tctctcctaacaaacaattgtcaattttctaaatattgtgcacatctctttaattaatttaagtcaatataaaaattat 52415450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 4671809 - 4671726
Alignment:
Q  60 tgcactctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||| |||||  ||||||||||| || || || ||||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  4671809 tgcacactctcacaacaaacaattgtcaattttttaaatattgtgcacatctatttaattaatttaagtcaatataaaaattat 4671726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 36319593 - 36319669
Alignment:
Q  67 tctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||||||||||| || || || ||||| ||||| | || |||||||||||||||||||||| ||||||||||    
T  36319593 tctcgtaacaaacaattgtcaattttttaaatattgtgtatatttttttaattattttaagtcaatgtaaaaattat 36319669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 30280999 - 30280921
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaatta 142  Q
    ||||||| |||||||||||| |  || || ||||| |||||||||||| |||||||| ||||||| |||||||||||||    
T  30280999 ctctctcataacaaacaattgttaattttttaaatattgtgcacatctctttaattaatttaagttaatataaaaatta 30280921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 41116878 - 41116831
Alignment:
Q  91 ttctaaattttgtgcacatctttttaattattttaagtcaatataaaa 138  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  41116878 ttctaaatattgtgcacatctttttgattattttaagccaatataaaa 41116831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 32769344 - 32769304
Alignment:
Q  103 tgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  32769344 tgcacatctctttaattaatttaagtcaatataaaaattat 32769304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Original strand, 1394517 - 1394547
Alignment:
Q  113 tttaattattttaagtcaatataaaaattat 143  Q
    |||||||||||||||||||||||||||||||    
T  1394517 tttaattattttaagtcaatataaaaattat 1394547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 2656120 - 2656042
Alignment:
Q  67 tctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattatat 145  Q
    |||| |||||||||||| |  || |||||||| ||||||| |||| ||||||||||| ||||| | || ||||||||||    
T  2656120 tctcataacaaacaattttaaattttctaaatattgtgcatatctctttaattatttcaagtctagatcaaaattatat 2656042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 41116827 - 41116789
Alignment:
Q  100 ttgtgcacatctttttaattattttaagtcaatataaaa 138  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  41116827 ttgtgcacatctttttgattattttaagccaatataaaa 41116789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 1177 - 1098
Alignment:
Q  64 ctctctcgtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||| |||||||||||| || || |||||||| ||||||||||||||||||||||||| | ||||||||||||||||    
T  1177 ctctctcataacaaacaattgtcaattttctaaatattgtgcacatctttttaattattttcactcaatataaaaattat 1098  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 272045 - 272117
Alignment:
Q  71 gtaacaaacaattatcgatattctaaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||||||||||| ||  | || ||||| ||||||| |||| ||||||||||||||||| |||| ||||||||    
T  272045 gtaacaaacaattttcatttttttaaatattgtgcatatctctttaattattttaagtctatatcaaaattat 272117  T

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Target: scaffold0475 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 11185 - 11234
Alignment:
Q  94 taaattttgtgcacatctttttaattattttaagtcaatataaaaattat 143  Q
    ||||| ||||||| |||| ||||||||||||||||| |||| ||||||||    
T  11185 taaatattgtgcatatctctttaattattttaagtctatatcaaaattat 11234  T

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Target: scaffold1986 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 525 - 489
Alignment:
Q  100 ttgtgcacatctttttaattattttaagtcaatataa 136  Q
    |||| |||||||||||| |||||||||||||||||||    
T  525 ttgtccacatctttttacttattttaagtcaatataa 489  T

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