View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3846_low_18 (Length: 243)

Name: NF3846_low_18
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3846_low_18
NF3846_low_18
[»] chr2 (3 HSPs)
chr2 (9-108)||(38560578-38560677)
chr2 (100-230)||(38560867-38560998)
chr2 (129-171)||(38579751-38579793)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 38560578 - 38560677
Alignment:
Q  9 aggcacattaaaagctatactattttgtaatcatatgataatgatggcacattaaaaactttcaacctcaccagttcattcggacatgtattattaggac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38560578 aggcacattaaaagctatactattttgtaatcatatgataatgatggcacattaaaaactttcaacctcaccaattcattcggacatgtattattaggac 38560677  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 38560867 - 38560998
Alignment:
Q  100 tattaggacccataccgcgtacatgaacactcacatcaatttatttttagggtcaatctgttttcacatctttaaaagacaaatggaatga-nnnnnnnn 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||             
T  38560867 tattaggacccataccgcgtacatgaacactcacatcaatttatttttagggtcaatgtgttttcacatctttaaaagacaaatggaatgattttttttt 38560966  T
Q  199 cccttctttaataaaagcttaattgtgtaaat 230  Q
    ||||||||||||||||||||||||||||||||    
T  38560967 cccttctttaataaaagcttaattgtgtaaat 38560998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 38579751 - 38579793
Alignment:
Q  129 ctcacatcaatttatttttagggtcaatctgttttcacatctt 171  Q
    ||||||||||||||||| ||||||||||| ||| |||||||||    
T  38579751 ctcacatcaatttatttctagggtcaatccgttctcacatctt 38579793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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