View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_low_24 (Length: 231)
Name: NF3846_low_24
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 3308170 - 3308386
Alignment:
| Q |
3 |
gagttcacggaagaagaaagtgaatgaggaaaagaatttatggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggat |
102 |
Q |
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| T |
3308170 |
gagttcacggaagaagaaagtgaatgaggaaaagaattcatggagaagaatcaaacttgaaaacttgtgggactacctaaggatcaaagggtagttggat |
3308269 |
T |
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| Q |
103 |
ggaagtggaggtcgatgcctataacagggttcaagaatttcttggacttgatcagttttgctgaagagtaattcgagcactcaagagagcaacaagtggt |
202 |
Q |
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| T |
3308270 |
ggaagtggaggtcgatgcctataacagggttcaagaatttctcggacttgatcagttttgctgaagagtaatttcggcactcaagagagcaacaagtggt |
3308369 |
T |
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| Q |
203 |
tgatgggtaaatattga |
219 |
Q |
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| T |
3308370 |
tgatgggtaaatattga |
3308386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 4386380 - 4386426
Alignment:
| Q |
130 |
ggttcaagaatttcttggacttgatcagttttgctgaagagtaattc |
176 |
Q |
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| T |
4386380 |
ggttcaagaattgcttggacttggtcaattttgttgaagagtaattc |
4386426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 16257364 - 16257296
Alignment:
| Q |
43 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
111 |
Q |
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| T |
16257364 |
tggaaaagaaccaaacttggaaacttgtaaagctacctaaacaccaaagggtagttggatgcaagtgga |
16257296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 16626784 - 16626852
Alignment:
| Q |
43 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
111 |
Q |
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|||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||| ||||||| |
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| T |
16626784 |
tggaaaagaaccaaacttgaaaacttgtgaagctacctaaacaccaaagggtagttggatgcaagtgga |
16626852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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