View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_low_3 (Length: 469)
Name: NF3846_low_3
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 5056714 - 5057165
Alignment:
| Q |
1 |
tcatgtagcttttgcggacaaaatcaatttaagggatcactgcattgagaagccaacaatgagtgatttccaaaaatgttctggtgagttagaaatcggt |
100 |
Q |
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| T |
5056714 |
tcatgtagcttttgcggacaaaatcaatttaagggatcactgcagtgagaagccaacgatgagtgatttccaaaaatgttctcgtgagttagaaatcggt |
5056813 |
T |
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| Q |
101 |
acaaggtcctcacatggcaagagagagaggagtaaagatgaggagacaagtaaaagttatgataccttgaataaatccagctcagaatgtagatttggta |
200 |
Q |
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| T |
5056814 |
acaaggtcctcacatggcaagagagagaggagtaaagatgaggagacaagtaaaaattatgatgccttgaataaatccagctcaaaatgtagatttggta |
5056913 |
T |
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| Q |
201 |
tggatatctcccctgacgatgtcgtaggacttataggtgaaaaacaattttggaaaacaagaagaacgatcatcaagtaagtttatttgtttagtattat |
300 |
Q |
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| T |
5056914 |
tggatatctcccctgacgatgtcgtaggacttataggtgaaaaacaattttggaaaacaagaagaacgatcatcaagtaagtttatttgtttagtattat |
5057013 |
T |
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| Q |
301 |
gttttttatgatttcaactttctctctttatgttaaactgttaaaatttacatctgcactgagctgagtttgatgtttttgacaggttaaacctatcttc |
400 |
Q |
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| T |
5057014 |
gttttttatgatttcaactttctctctttatgttaaactgttaaaatttacatctgcactgagctgagtttgatgtttttgacaggttaaacctatcttc |
5057113 |
T |
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| Q |
401 |
tttatctgcactatcttctttattatgtgcataggacttataggaaacttct |
452 |
Q |
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| T |
5057114 |
tttatctgcactatcttctttattatgtgcataggacttataggaaacttct |
5057165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 5179432 - 5179343
Alignment:
| Q |
7 |
agcttttgcggacaaaatcaatttaagggatcactgcattgagaagccaacaatgagtgatttccaaaaatgttctggtgagttagaaat |
96 |
Q |
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|||||||| ||||||||||| ||||||||||| | || |||||||| |||||||||| ||| |||||||| |||||||| |||||| |
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| T |
5179432 |
agcttttgtagacaaaatcaacttaagggatcattacactgagaagctggaaatgagtgatgtccgaaaatgttatggtgagtcagaaat |
5179343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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