View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_low_5 (Length: 454)
Name: NF3846_low_5
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 199 - 438
Target Start/End: Original strand, 43385488 - 43385730
Alignment:
| Q |
199 |
tattgttgtaaacttatgagtttcattagtagtgaaaagtgattacaacatgcctttctgttggaaaatgttac--gattattttctaagaaaattgtac |
296 |
Q |
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| T |
43385488 |
tattgttgtaaacttatgagtttcattagtagtgaaaagtgattacaacatgcctttctgttggaaaatgttacacgattattttctaagaaaattgtac |
43385587 |
T |
|
| Q |
297 |
gttattttgaagttgaaaaa-gtagatataactnnnnnnnttaacaagcaatttttatacttcagccagagtaagaaaaacgtagttgtttaacaaggtg |
395 |
Q |
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| T |
43385588 |
gttattttgaagttgaaaaaagtagatataactaaaaaaattaacaagcaatttttatacttcagccagagtaagaaaaacgtagttgtttaacaaggtg |
43385687 |
T |
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| Q |
396 |
aataacatctttgtcaacaaaacaaaataacgggagaataaac |
438 |
Q |
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| T |
43385688 |
aataacatctttgtcaacaaaaaaaaataacgggagaataaac |
43385730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 43385353 - 43385451
Alignment:
| Q |
64 |
tagcaattattagaaatgtgatgacatataaactannnnnnncgaaggaatgactaaagtttttgttggaacaaagtaactattttgtgttgactttgt |
162 |
Q |
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| T |
43385353 |
tagcaattattagaaatgtgatgacatataaactatttttttcgaaggaatgactaaagtttttgttggaacaaagtaactattttatgttgattttgt |
43385451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 43385292 - 43385325
Alignment:
| Q |
5 |
ccaagaatatcatttgcaatttatggcttgtgac |
38 |
Q |
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| T |
43385292 |
ccaacaatatcatttgcaatttatggcttgtgac |
43385325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 1299299 - 1299247
Alignment:
| Q |
199 |
tattgttgtaaacttatgagtttcattagtagtgaaaagtgattacaacatgc |
251 |
Q |
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| T |
1299299 |
tattgttgtaatcttatgagtttcattagtagtgaaaagttattacaacatgc |
1299247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 44913592 - 44913646
Alignment:
| Q |
200 |
attgttgtaaacttatgagtttcattagtagtgaaaagtgattacaacatgcctt |
254 |
Q |
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| T |
44913592 |
attgttgtaatcttatgagtttcattagttgtgaaaagtgattacatcatgcctt |
44913646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 40414458 - 40414513
Alignment:
| Q |
200 |
attgttgtaaacttatgagttt-cattagtagtgaaaagtgattacaacatgcctt |
254 |
Q |
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| T |
40414458 |
attgttgtaaacttacgagttttcattattagtgaaaagtgattacaacatgcctt |
40414513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 5437939 - 5437884
Alignment:
| Q |
199 |
tattgttgtaaacttatgagtttcattagtagtgaaaagtgattacaacatgcctt |
254 |
Q |
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||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| |
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| T |
5437939 |
tattgttgtaatctattgagtttcattagttgtgaaaaatgattacaacatgcctt |
5437884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 30647575 - 30647541
Alignment:
| Q |
220 |
ttcattagtagtgaaaagtgattacaacatgcctt |
254 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30647575 |
ttcattagtagtgaaaagtgattacaacatgcctt |
30647541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 30642758 - 30642724
Alignment:
| Q |
220 |
ttcattagtagtgaaaagtgattacaacatgcctt |
254 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
30642758 |
ttcattagtagtgaaaagtgattacagcatgcctt |
30642724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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