View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3846_low_6 (Length: 443)
Name: NF3846_low_6
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3846_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 4004546 - 4004119
Alignment:
| Q |
1 |
tgaatgaagtgctggaattgattttgaaggcgaaaaaagtttgaattttgaagttgttttagtgattttgtttcttgaagaagtgaaaaaggttagaatt |
100 |
Q |
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| T |
4004546 |
tgaatgaagtgctggaattgattttgaaggtgaaaaaagtttgtattttgaagttgttttagtgattttgttttttgaagaagtgaaaaaggttagaatt |
4004447 |
T |
|
| Q |
101 |
tgaagttgttttggtgattgttgnnnnnnnnn-----gggagaggtgaaaaaggtttgaaattgaagtgattttagtgattattgttgtttttgaagaat |
195 |
Q |
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| T |
4004446 |
tgaagttgttttggtgattgttgtgttttttttttttgggagaggtgaaaaaggtttgaaattgaagtgattttagtgattattgttgtttttgaagaat |
4004347 |
T |
|
| Q |
196 |
ttgattctcaatggctgttgaggaatctaggcaagtgattcctgagttagaaagagaggagaatttaattgctgcagcaagacatattgtgatggcttta |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4004346 |
ttgattctcaatggctgttgaggaatctaggcaagtgattcctgagttagaaagagaggagaatttaattgctgcagcaagacatattgtgatggcttta |
4004247 |
T |
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| Q |
296 |
gggtcaaagaacagtcttacaagtgatgaaaagaagattctggctgatcttggatcaaagttgtcttccatgaacatacaaagtgagaaggaagagggga |
395 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4004246 |
gggtcaaagaacagtcttacaaatgatgaaaagaagattctggctgatcttggatcaaagttgtcttccatgaacatacaaagtgagaaggaagagggga |
4004147 |
T |
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| Q |
396 |
agatagggagagaaaaggagaatgatat |
423 |
Q |
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| T |
4004146 |
agatagggagagaaaaggagaatgatat |
4004119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4009938 - 4009816
Alignment:
| Q |
1 |
tgaatgaagtgctggaattgattttgaaggcgaaaaaagtttgaattttgaagttgttttagtgattttgtttcttgaagaagtgaaaaaggttagaatt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4009938 |
tgaatgaagtgctggaattgattttgaaggtgaaaaaagtttgtattttgaagttgttttagtgattttgttttttgaagaagtgaaaaaggttagaatt |
4009839 |
T |
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| Q |
101 |
tgaagttgttttggtgattgttg |
123 |
Q |
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| T |
4009838 |
tgaagttgttttggtgattgttg |
4009816 |
T |
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Back To:
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