View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3846_low_8 (Length: 396)

Name: NF3846_low_8
Description: NF3846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3846_low_8
NF3846_low_8
[»] scaffold0331 (2 HSPs)
scaffold0331 (98-380)||(1338-1628)
scaffold0331 (7-47)||(1246-1286)
[»] chr4 (1 HSPs)
chr4 (189-380)||(48010153-48010345)
[»] chr6 (2 HSPs)
chr6 (98-151)||(7402907-7402960)
chr6 (7-47)||(7403012-7403052)
[»] chr1 (4 HSPs)
chr1 (279-380)||(44473605-44473706)
chr1 (295-380)||(44480388-44480473)
chr1 (297-379)||(44483485-44483567)
chr1 (280-377)||(44471895-44471992)
[»] chr3 (1 HSPs)
chr3 (201-243)||(15842533-15842575)


Alignment Details
Target: scaffold0331 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 98 - 380
Target Start/End: Original strand, 1338 - 1628
Alignment:
Q  98 ggtaaatttctagatttgtattatgcattctcagttctaagttctatgcaattggttttgctattgggtttcgccgtcgttcgcacttcaactc------ 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||          
T  1338 ggtaaatttctagatttgtattatgcattctcagttctaagttctatgcaattggttttgctattgggtttcgccgtcgtttgcacttcaactctcctac 1437  T
Q  192 --aactttctcaaggtaaaatttattcatatgaatctttgttatcggtatagaagaataaggaaattactctttagaatttttgatatcgatatgcctga 289  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1438 tcaactttctcaaggtaaaatttattcatatgaatctttgttatcggtatagaagaataaggaaattactctttaggatttttgatatcgatatgcctga 1537  T
Q  290 taacaaattttcactgctagatatgctactctgaatattagtcacatcttttccatacattatgccttgattcccactgtcattactacta 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1538 taacaaattttcactgctagatatgctactctgaatattagtcacatcttttccatacattatgccttgattcccactgtcattactacta 1628  T

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Target: scaffold0331; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 1246 - 1286
Alignment:
Q  7 gttctttgttatcttgtacgtaccatgatcatagtattgcc 47  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  1246 gttctttgttatcttgtacgtaccatgatcacagtattgcc 1286  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 189 - 380
Target Start/End: Original strand, 48010153 - 48010345
Alignment:
Q  189 ctcaactttctcaaggtaaaatttattcatatgaatctttgttatcggtatagaa-gaataaggaaattactctttagaatttttgatatcgatatgcct 287  Q
    |||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||| ||||||||| |||| |||||||||| ||| |||||||      
T  48010153 ctcaactttctcaaggtaaaatttattcatttgaatcattgttaccggtatagaatgaatcaggaaattaatcttcagaatttttgttattgatatgcta 48010252  T
Q  288 gataacaaattttcactgctagatatgctactctgaatattagtcacatcttttccatacattatgccttgattcccactgtcattactacta 380  Q
    ||| || |||||||| ||||||| ||| ||| |||||||| | ||||| ||||||||| ||| |||||||  | |||| ||||||||||||||    
T  48010253 gattacgaattttcattgctagacatgttaccctgaatatcaatcacagcttttccatccatcatgccttactccccattgtcattactacta 48010345  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 7402960 - 7402907
Alignment:
Q  98 ggtaaatttctagatttgtattatgcattctcagttctaagttctatgcaattg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7402960 ggtaaatttctagatttgtattatgcattctcagttctaagttctgtgcaattg 7402907  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 7403052 - 7403012
Alignment:
Q  7 gttctttgttatcttgtacgtaccatgatcatagtattgcc 47  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  7403052 gttctttgttatcttgtacgtaccatgatcacagtattgcc 7403012  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 44473706 - 44473605
Alignment:
Q  279 gatatgcctgataacaaattttcactgctagatatgctactctgaatattagtcacatcttttccatacattatgccttgattcccactgtcattactac 378  Q
    |||||||| ||| || |||||||| ||||||||||| |||||||||||| | ||||| ||||||||| |||| ||||||  | |||||||||||||||||    
T  44473706 gatatgcccgatgacgaattttcattgctagatatgttactctgaatatcattcacagcttttccatccattctgcctttctccccactgtcattactac 44473607  T
Q  379 ta 380  Q
    ||    
T  44473606 ta 44473605  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 44480473 - 44480388
Alignment:
Q  295 aattttcactgctagatatgctactctgaatattagtcacatcttttccatacattatgccttgattcccactgtcattactacta 380  Q
    |||||||||||||||||||| |||||| ||||| | ||||| ||||||||| |||| ||||||| | |||||||||||| ||||||    
T  44480473 aattttcactgctagatatgttactctaaatatcattcacagcttttccatccattctgccttgctccccactgtcattgctacta 44480388  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 44483567 - 44483485
Alignment:
Q  297 ttttcactgctagatatgctactctgaatattagtcacatcttttccatacattatgccttgattcccactgtcattactact 379  Q
    |||||||||||||||||| |||||||||||| | ||||| ||||||||| |||| | ||||  | ||||||||||||||||||    
T  44483567 ttttcactgctagatatgttactctgaatatcattcacagcttttccatccattctacctttctccccactgtcattactact 44483485  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 44471992 - 44471895
Alignment:
Q  280 atatgcctgataacaaattttcactgctagatatgctactctgaatattagtcacatcttttccatacattatgccttgattcccactgtcattacta 377  Q
    ||||||| ||| || |||| | ||||||||||||| |||||||||||| | ||||| ||||||||| |||| ||||||  | ||||||||||| ||||    
T  44471992 atatgcccgatgaccaattgttactgctagatatgttactctgaatatcattcacagcttttccatccattctgcctttctccccactgtcatcacta 44471895  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 15842533 - 15842575
Alignment:
Q  201 aaggtaaaatttattcatatgaatctttgttatcggtatagaa 243  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  15842533 aaggtaaaatttattcatttgaatctttgttattggtatagaa 15842575  T

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