View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3847_high_1 (Length: 971)
Name: NF3847_high_1
Description: NF3847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3847_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 843; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 843; E-Value: 0
Query Start/End: Original strand, 1 - 953
Target Start/End: Complemental strand, 3810703 - 3809770
Alignment:
| Q |
1 |
atcatactaatgatgcattaaaactttgaagataatctgtgacttcttgaatcagctcagaatcacaacttaattgagtaggtatcccatcttggttata |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810703 |
atcatgctaatgatgcattaaaactttgaagataatatgtgacttcttgaatcagttcagaatcacaacttaattgagtaggtatcccatcttggttata |
3810604 |
T |
|
| Q |
101 |
tagcatatctttcttcttgtgaggagttttgtacctgtttgatcccttattcttcattatttcaaccatgcatgtttgtagagtataaaaaattttatcg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3810603 |
tagcatatctttcttcttgtgaggagttttgtacctgtttgatcccttattcttcattatttcaaccatgcatgtttgtagagtataaatttttttatcg |
3810504 |
T |
|
| Q |
201 |
gattgtacacatgaatattcatcaaatgctttctgaactgcatgaataagatcatcaattgacttcattgattctttctgctgtaaagactgaatggcat |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3810503 |
gattgtacacatgaatattcatcgaatgctttctgaactgcatgaataagatcatcaattgacttcattgattctttctgctgtaaatactgaatggcat |
3810404 |
T |
|
| Q |
301 |
tgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaaatc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3810403 |
tgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggt-------------------caaacccatcttcacttgctgctcgacaaaaatc |
3810323 |
T |
|
| Q |
401 |
aggatcatctttagaaatatgagactttgcattgtcttgttgaatgaaaattgtcttccctacatcttctattggccagcaattcttaagggctggtaag |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810322 |
aggatcatctttagaaatatgagactttgcattctcttgttgaatgaaaattgtcttccctacatcttctattggccagcaattcttaagggctggtaag |
3810223 |
T |
|
| Q |
501 |
attttgctcatcatgaaagttttattcacctctcttgtcacagaagttataggtttcctttctatagtccctgcagctctgttgacactgcttcttctag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3810222 |
attttgctcatcatgaaagttttattcacctctcttgtcacagaagttataggtttcctttctatagtccctgcagctctgttgacactgcttcttctag |
3810123 |
T |
|
| Q |
601 |
ctggctgttcatacacaaatggaaatataccaatcttccctgagaatgtctcctttccttcgttgtcaaacctgggtctggccactgcagctacaaacat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810122 |
ctggctgttcatacacaaatggaaatataccaatcttccctgagaatgtctcctttccttcgttgtcaaacctgggtctggccactgcagctacaaacat |
3810023 |
T |
|
| Q |
701 |
aagcttaccaataaaaattttgctttgacatgctcggtgtggctcctcctcttccgaatgcaaatagtaattggttttattttttgtaatatagaaccat |
800 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3810022 |
aagcttaccaataaaatttttgctttgacatgttcggtgtggctcctcctcttccgaattcaaatagtaattggttttattttttgtaatatagaaccat |
3809923 |
T |
|
| Q |
801 |
ttctcatcgataaacacagtattgtgcatggaagtaaacttcggatcatgaggcgagctgttacggtcgagcattgacaaacaaaaccttaaacgagcaa |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809922 |
ttctcatcgataaacacagtattgtgcatggaagtaaacttcggatcatgaggcgagctgttacggtcgagcattgacaaacaaaaccttaaacgagcaa |
3809823 |
T |
|
| Q |
901 |
tcatattttcctcttttaaatatggcttaagtgtacttgaatggcgtcgtata |
953 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3809822 |
tcatattttcctcttttaaatatggcttaagtgtacttgaatggcgtcgtata |
3809770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 378
Target Start/End: Complemental strand, 1329651 - 1329564
Alignment:
| Q |
291 |
tgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatctt |
378 |
Q |
| |
|
||||||||| |||| ||||| | ||| |||||||| | || || ||||| ||||||||||| |||| ||||||||| |||||||||| |
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|
| T |
1329651 |
tgaatggcactgaagaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatctt |
1329564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 45489304 - 45489216
Alignment:
| Q |
309 |
cccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaa |
397 |
Q |
| |
|
||||| ||||| |||||||||||||| || || || |||||||| ||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
45489304 |
cccaaatccaaaacattcaaatcgggagagttaggtggttgacatatcaatcgaatgtcaaacccaccttcagaagctgctctacaaaa |
45489216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 378
Target Start/End: Original strand, 42539903 - 42539990
Alignment:
| Q |
291 |
tgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatctt |
378 |
Q |
| |
|
||||||||| |||| ||||| | ||| |||||||| | || || ||||| ||||||||||| |||| ||||||||| |||||||||| |
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| T |
42539903 |
tgaatggcactgaagaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatctt |
42539990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 321 - 397
Target Start/End: Complemental strand, 8187209 - 8187133
Alignment:
| Q |
321 |
acattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaa |
397 |
Q |
| |
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|||||||||||||| ||||| || ||| ||| ||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
8187209 |
acattcaaatcgggagaattaggtcgttaacatatcaatcgaatgtcaaacccaccttcaaaagctgctctacaaaa |
8187133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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