View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3847_high_8 (Length: 243)
Name: NF3847_high_8
Description: NF3847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3847_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 43760022 - 43760221
Alignment:
| Q |
28 |
agtcaattgtgtctacatctctaaccatgtagtggctacaatgattttctattattccaacttagagttacaaattacaacttgtactttaaatactaca |
127 |
Q |
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| T |
43760022 |
agtcaattgtgtctacatctctaaccatgtagtggctacaatgattttctattattccaacttagagttacaaattacaacttgtactttaaatactaca |
43760121 |
T |
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| Q |
128 |
atccagtttacaaaataccctgagatgtaagggatctgctcactacaatgagctatacccaacaatctggtgttagctaggcatttattttagtttcctc |
227 |
Q |
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| T |
43760122 |
atccaatttacaaaataccctgaagtgtaagggatctgctcactacaatgagctatacccaacaatctggtgttagctaggcatttattttagtttcctc |
43760221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 2888795 - 2888848
Alignment:
| Q |
59 |
gtggctacaatgattttctattattccaacttagagttacaaattacaacttgt |
112 |
Q |
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| T |
2888795 |
gtggctgcaatgattttctattattcaagcttagagttacagattacaacttgt |
2888848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 1487039 - 1486990
Alignment:
| Q |
58 |
agtggctacaatgattttctattattccaacttagagttacaaattacaa |
107 |
Q |
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| T |
1487039 |
agtggctgcaattattttctattattcaaacttaaagttacaaattacaa |
1486990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 34372464 - 34372530
Alignment:
| Q |
74 |
ttctattattccaacttagagtt-acaaattacaacttgtactttaaatactacaatccagtttacaa |
140 |
Q |
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| T |
34372464 |
ttctattattcaagcttagggtttacaaagtacaacttgta-tttaaatactacgatccagtttacaa |
34372530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 29820573 - 29820631
Alignment:
| Q |
69 |
tgattttctattattccaacttagagttacaaattacaacttgtactttaaatactacaat |
129 |
Q |
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| T |
29820573 |
tgattttctattattcaaacttag-gttacagattacaaatcgta-tttaaatactacaat |
29820631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 6522154 - 6522221
Alignment:
| Q |
73 |
tttctattattccaacttag-agttacaaattacaacttgtactttaaatactacaatccagtttacaa |
140 |
Q |
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| T |
6522154 |
tttctattattcaaacttaggatttacaaattacaacttgt-gtttaaatactacggtctagtttacaa |
6522221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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