View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3847_low_11 (Length: 217)
Name: NF3847_low_11
Description: NF3847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3847_low_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2657824 - 2657608
Alignment:
| Q |
1 |
ttccctctcatataaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacgaagttcacggcttaaa |
100 |
Q |
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| T |
2657824 |
ttccctctcatataaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacgaagttcacggcttaaa |
2657725 |
T |
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| Q |
101 |
tattttgtattgaactatcatagttatcttattctaatcaatgaattacgtgcactgcagattgccaatgaatcaaaagatgacgattttactctcaggt |
200 |
Q |
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| T |
2657724 |
tattttgtattgaactatcatagttatcttattctaatcaatgaattacgtgcactgcagattgccaatgaatcaaaagatgacgattttactctcgggt |
2657625 |
T |
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| Q |
201 |
gctgctataactcaatt |
217 |
Q |
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||||||||||||||||| |
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| T |
2657624 |
gctgctataactcaatt |
2657608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 28804546 - 28804413
Alignment:
| Q |
13 |
taaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacgaagttcacggcttaaatattttgtattg |
112 |
Q |
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||||||||||||| ||||||||||| | |||||||||| |||||||||||||| |||| | |||| | |||| | |||||||| |||||||||| |
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| T |
28804546 |
taaggataaattgcagaatgcagggtatgtgttttaaaatatggcatcttacgtttttattaacataaaaggtagtttatggcttaaacattttgtattt |
28804447 |
T |
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| Q |
113 |
aactatcatagttatcttattctaatcaatgaat |
146 |
Q |
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| T |
28804446 |
aactatgataattatcatattataatcaatgaat |
28804413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 3698445 - 3698310
Alignment:
| Q |
13 |
taaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacgaagttcacggcttaaatattttgtattg |
112 |
Q |
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| T |
3698445 |
taaggataaatcgctgaatgcaagatagtgggcttaaaatacgacatcttatatttttgttaacaaaaaaggaagttcacggcttaacgattttgtattg |
3698346 |
T |
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| Q |
113 |
aactatcatagttatcttattctaatcaatgaatta |
148 |
Q |
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| T |
3698345 |
aactatcatagttatcttattctaattaatgaatta |
3698310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 3705209 - 3705148
Alignment:
| Q |
13 |
taaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgtta |
74 |
Q |
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|||||| |||| | |||||||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
3705209 |
taaggacaaatcgctgaatgcagggtagaggtcttaaaatatgacatcttatatttttgtta |
3705148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 8331735 - 8331787
Alignment:
| Q |
96 |
ttaaatattttgtattgaactatcatagttatcttattctaatcaatgaatta |
148 |
Q |
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|||||||||||||||||||||||||||||||| || || |||||||||||||| |
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| T |
8331735 |
ttaaatattttgtattgaactatcatagttattttgttgtaatcaatgaatta |
8331787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 28326151 - 28326179
Alignment:
| Q |
112 |
gaactatcatagttatcttattctaatca |
140 |
Q |
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| T |
28326151 |
gaactatcatagttatcttattctaatca |
28326179 |
T |
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