View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3847_low_2 (Length: 693)
Name: NF3847_low_2
Description: NF3847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3847_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 16 - 679
Target Start/End: Original strand, 33153234 - 33153897
Alignment:
| Q |
16 |
caggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattcatatatgtttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33153234 |
caggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattcatatatgtttt |
33153333 |
T |
|
| Q |
116 |
atgaaacaatctatcttcatgcaccatcgtgttagttataaacaagttgaatttggaaccagggtaacacaagagaagaaatagctagtttgggaactgt |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33153334 |
atgaaacaatctatcttcatgcaccatcatgttagttataaacaagttgaatttggaaccagggtaacacaagagaagaaatagctagtttgggaactgt |
33153433 |
T |
|
| Q |
216 |
tctacggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttgagctgaagagagaaaggcaagtagcttct |
315 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |
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| T |
33153434 |
tctacggtgcatttcagattacaatattgaacgtgcggatttacttaacgagatccaaggtagaattattgatctgaagagaaaaaggcaagtagcttct |
33153533 |
T |
|
| Q |
316 |
tgtattggaatttcgcaaatgaattaacaggattctgcataagttttggtggcactttgggtttcagttcttggatgtaggtaatttgatagtatttttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33153534 |
tgtattggaatttcgcaaatgaattaacaggattctgcataagttttggtggcactttgggtttcagttcttggatgtaggtaatttgatagtatttttt |
33153633 |
T |
|
| Q |
416 |
ggttttgggctggttaagaaaatgtttatcaaatgtatcatcatgttaacatgtatgtttatcaattcatctgatcgagacacaaggggaaggattgaca |
515 |
Q |
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| T |
33153634 |
gtttttgggctggttaagaaaatgtttatcaaatgtatcatcatgttaacatgtatgtttatcaattcatctgatcgagacacaaggggaagtattgaca |
33153733 |
T |
|
| Q |
516 |
gtagagagaactggattgtacaaactggtgtaaaaatatggtggtcaccttgtaccattttgatgttttgattgtgatgataagagttgggttttgctgt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33153734 |
gtagagagaactggattgtacaaactggtgtaaaaatatggtggtcaccttgtaccattttgatgttttgattgtgatgataagagttgggttttgctgt |
33153833 |
T |
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| Q |
616 |
tccaaaaacaaagcatcaattgttttagttgctttgaaatattgaggtaacattatggaaaaag |
679 |
Q |
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|||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33153834 |
tccaaaaaaaaagcctcaattgctttagttgctttgaaatattgaggtaacattatggaaaaag |
33153897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 338 - 471
Target Start/End: Original strand, 25081080 - 25081213
Alignment:
| Q |
338 |
attaacaggattctgcataagttttggtggcactttgggtttcagttcttggatgtaggtaatttgatagtattttttggttttgggctggttaagaaaa |
437 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25081080 |
attaacaggattctgcataagttttggtggcacttcgggtttcagttctaggatgttggtaatttgatagtattttt-ggttttgggctggttaagaaat |
25081178 |
T |
|
| Q |
438 |
tgtttatcaa-atgtatcatcatgttaacatgtat |
471 |
Q |
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||||||| |||||| ||||||||||||||||| |
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| T |
25081179 |
tgtttatatctatgtattatcatgttaacatgtat |
25081213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 2363666 - 2363978
Alignment:
| Q |
18 |
ggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattcatat-atgtttta |
116 |
Q |
| |
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|||||||||||||| ||||| | || | ||||||||| |||||| ||||||||||||| ||||| |||||||| ||| |||||||| || || ||||| |
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| T |
2363666 |
ggaacatgtgcagaatgcaagatcgattaatgagagcagttgcaaggcaaccaactccatagaaatcaaggttctttttacttattcaaattatatttta |
2363765 |
T |
|
| Q |
117 |
tgaaacaatctatcttcatgcaccatcgtgttagttataaacaagttgaatttggaaccagggtaacacaagaga---agaaatagctagtttgggaact |
213 |
Q |
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||||||| || ||||||||||||| ||| | ||||||| | || |||||| || |||| ||| ||| ||| |||||| |||||| |||||||| |
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| T |
2363766 |
tgaaacattccatcttcatgcacctggatgtaatttataaatattttcaatttgaaatcaggataaggcaaaagaccaagaaattgctagtctgggaact |
2363865 |
T |
|
| Q |
214 |
gttctacggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttgagctga--agagagaaaggcaagtagc |
311 |
Q |
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||||||| |||| |||||||| ||||||| |||| | ||||||||| |||||||| || |||||||||| |||||| | ||||||||||| |||||| |
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| T |
2363866 |
gttctacagtgcctttcagataacaatatggaatccgtggatttactgaacgagattcacggtagaattcatgagctaaatagagagaaaggtgagtagc |
2363965 |
T |
|
| Q |
312 |
ttcttgtattggaa |
325 |
Q |
| |
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|| ||||||||||| |
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| T |
2363966 |
tt-ttgtattggaa |
2363978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 415 - 679
Target Start/End: Original strand, 2364070 - 2364347
Alignment:
| Q |
415 |
tggttttgggctggttaagaaaatgtttatcaaatgtatcatcatgttaacatgtatgtttatcaattcatctgatcgagacacaaggggaaggattgac |
514 |
Q |
| |
|
||||||||| ||||||||| |||| ||||| ||||||| || |||||||||| || ||||| |||||||||||||||| || ||||||| ||| |
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| T |
2364070 |
tggttttggaatggttaagagaatgattatctaatgtattattatgttaacatctaa------caatttatctgatcgagacacacggcgaaggat-gac |
2364162 |
T |
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| Q |
515 |
agtagagagaactggattgtacaaac----tggtgtaaaaatatggtggt-cacct-----tgtaccattttgatgttttgattgtgatgataagagttg |
604 |
Q |
| |
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|||| || ||||||| ||||||||| || ||||||||| ||||| | ||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
2364163 |
agtaacgacaactggactgtacaaacaaactgatgtaaaaatctggtgatacacctcgtgttgtaccattttgatgttttgattatgatgataagagtta |
2364262 |
T |
|
| Q |
605 |
ggttttgctgttccaaaaacaa----------agcatcaattgttttagttgctttgaaatattgaggtaacattatggaaaaag |
679 |
Q |
| |
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| ||||| |||||||| || || ||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
2364263 |
gtttttgttgttccaacaaaaatagaagagttagcctcaattgctttaattgctttgaaatattgaggtaacattatggaaaaag |
2364347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 39425213 - 39425098
Alignment:
| Q |
19 |
gaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttc-tcttttcttattcatatatgttttat |
117 |
Q |
| |
|
||||||||||||| ||||||| ||| || |||||| | |||| || |||||||||||| ||||| ||||||| | |||||||||||| || | |||||| |
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| T |
39425213 |
gaacatgtgcagaatgcaaaactgatttctgagagtacttgcatgaaaaccaactccatcgaaattaaggttctttttttcttattca-atttattttat |
39425115 |
T |
|
| Q |
118 |
gaaacaatctatcttca |
134 |
Q |
| |
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|||||| || ||||||| |
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| T |
39425114 |
gaaacattccatcttca |
39425098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 39224841 - 39224914
Alignment:
| Q |
19 |
gaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttct |
92 |
Q |
| |
|
|||||||| |||| ||| ||| | | || |||||||| ||||||| |||||||||||||||||| |||||||| |
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| T |
39224841 |
gaacatgtccagaatgccaaacttatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggttct |
39224914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 51577016 - 51577103
Alignment:
| Q |
18 |
ggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattca |
105 |
Q |
| |
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||||| ||||||| | |||||||||| || ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||| |
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| T |
51577016 |
ggaacttgtgcagtgggcaaaagtgatttctgagagcaactgcaagaaaaccaactccattgaaatcaaggttcgtatttcttattca |
51577103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 51577214 - 51577283
Alignment:
| Q |
221 |
ggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttgagct |
290 |
Q |
| |
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||||| |||| ||| ||||||| |||| || |||||||||| || |||| |||||||||||||||||||| |
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|
| T |
51577214 |
ggtgcgtttcggataacaatatagaatatgtggatttacttgaccagattcaaggtagaattcttgagct |
51577283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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