View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3847_low_3 (Length: 420)
Name: NF3847_low_3
Description: NF3847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3847_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 48 - 402
Target Start/End: Complemental strand, 43170184 - 43169830
Alignment:
| Q |
48 |
aacaacaggagcattggatggtaaaatagtgaacaacgatgttagagtcagaactcacatagtttcaacttacagtggacacacacacaagggtgcgggc |
147 |
Q |
| |
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| T |
43170184 |
aacaacaggagcattggatggtaaaatagtgaacaacgatgttagagtcagaactcacatagtttcaacttacagtggacacacacacaagtgtgcgggc |
43170085 |
T |
|
| Q |
148 |
tcaagtggtctctcgatggccaacaattggctagtgggggaggcgataatatcgtcacatatgggataggtctgctgcttcttcaaattcacggcccacg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43170084 |
tcaagtggtctctcgatggccaacaattggctagtgggggaggcgataatatcgtcacatatgggataggtctgctgcttcttcaaattcacggcccacg |
43169985 |
T |
|
| Q |
248 |
cgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttcaggtggaggtgaaggtg |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43169984 |
cgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttcaggtggaggtgaaggtg |
43169885 |
T |
|
| Q |
348 |
atcaatgtgataagatgtggaacacgcacacgggtgcacaattgaattctgttga |
402 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43169884 |
atcaatgtattaagatgtggaacacgcacacgggtgcacaattgaattctgttga |
43169830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 48 - 402
Target Start/End: Original strand, 43218152 - 43218499
Alignment:
| Q |
48 |
aacaacaggagcattggatggtaaaatagtgaacaacgatgttagagtcagaactcacatagtttcaacttacagtggacacacacacaagggtgcgggc |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
43218152 |
aacaacaggagcattggatggtaaaatagtgaacaacgatgttagagtcagaactcacatagtttcaacttacagtggacacacaca--agtgtgcgggc |
43218249 |
T |
|
| Q |
148 |
tcaagtggtctctcgatggccaacaattggctagtgggggaggcgataatatcgt-cacatatgggataggtctgctgcttcttcaaattcacggcccac |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43218250 |
tcaagtggtctctcgatggccaataattggctagtgggggaggcgataatgtcgttcatatatgggataggtctgctgcttcttcaaattcacggcccac |
43218349 |
T |
|
| Q |
247 |
gcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttcaggtggaggtgaaggt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
43218350 |
acgttggcttcacaagtttgaggaacacacagctcctgtcaaggcgttggcttggtgtccgtttcagtgtaatttattagcttc------aggtgaaggt |
43218443 |
T |
|
| Q |
347 |
gatcaatgtgataagatgtggaacacgcacacgggtgcacaattgaattctgttga |
402 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||| |
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|
| T |
43218444 |
gatcaatgtattaagatgtggaacacccacacgggtgcacgattgaactctgttga |
43218499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 43218105 - 43218142
Alignment:
| Q |
18 |
cacagatttgcagtgagttcattggcttggaacaacag |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
43218105 |
cacagatttgcagtgagttcattggcttggaacaacag |
43218142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 43170231 - 43170194
Alignment:
| Q |
18 |
cacagatttgcagtgagttcattggcttggaacaacag |
55 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
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|
| T |
43170231 |
cacaggtttgcagtgagttcattggcttggaacaacag |
43170194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 141 - 402
Target Start/End: Complemental strand, 19026058 - 19025796
Alignment:
| Q |
141 |
tgcgggctcaagtggtctctcgatggccaacaattggctagtgggggaggcgataatatcgt-cacatatgggataggtctgctgcttcttcaaattcac |
239 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||||| ||||| ||| | |||||| | || |||||||||||||||||||| | |||||||| ||||| |
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|
| T |
19026058 |
tgcggcctcaagtggtcgcttgatggaaaaaaattggcgagtggtggaagtgataatgttgttcacatatgggataggtctgcggtttcttcaagttcac |
19025959 |
T |
|
| Q |
240 |
ggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttcaggtggagg |
339 |
Q |
| |
|
|| | || ||||||||||| ||||||||||||||||||||| || ||||||| |||| ||||||||||||||| || |||| |||||||| |||||||| |
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|
| T |
19025958 |
ggactacccgttggcttcataagtttgaggaacacacagctgctgtcaaggcgctggcgtggtgtccgtttcagagtgatttgttagcttctggtggagg |
19025859 |
T |
|
| Q |
340 |
tgaaggtgatcaatgtgataagatgtggaacacgcacacgggtgcacaattgaattctgttga |
402 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| || ||||||||||| ||| |||||||||| |
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|
| T |
19025858 |
tgaaggtgatcaatgtattaagctgtggaacatgcgcacgggtgcacgcttggattctgttga |
19025796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 141 - 402
Target Start/End: Original strand, 20728578 - 20728840
Alignment:
| Q |
141 |
tgcgggctcaagtggtctctcgatggccaacaattggctagtgggggaggcgataatatcgt-cacatatgggataggtctgctgcttcttcaaattcac |
239 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||||| ||||| ||| | |||||| | || |||||||||||||||||||| | |||||||| ||||| |
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|
| T |
20728578 |
tgcggcctcaagtggtcgcttgatggaaaaaaattggcgagtggtggaagtgataatgttgttcacatatgggataggtctgcggtttcttcaagttcac |
20728677 |
T |
|
| Q |
240 |
ggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttcaggtggagg |
339 |
Q |
| |
|
|| | || ||||||||||| ||||||||||||||||||||| || ||||||| |||| ||||||||||||||| || |||| |||||||| |||||||| |
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|
| T |
20728678 |
ggactacccgttggcttcataagtttgaggaacacacagctgctgtcaaggcgctggcgtggtgtccgtttcagagtgatttgttagcttctggtggagg |
20728777 |
T |
|
| Q |
340 |
tgaaggtgatcaatgtgataagatgtggaacacgcacacgggtgcacaattgaattctgttga |
402 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
20728778 |
tgaaggtgatcaatgtattaagctgtggaacatgcgcacgggtgcacgcttggattctgttga |
20728840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 49 - 402
Target Start/End: Complemental strand, 43526910 - 43526558
Alignment:
| Q |
49 |
acaacaggagcattggatggtaaaatagtgaacaacgatgttagagtcagaactcacatagtttcaacttacagtggacacacacacaagggt-gcgggc |
147 |
Q |
| |
|
|||||||||| | ||||||||||| | || ||||| ||||||||||| ||| ||||||| ||| ||| |||| ||||||| || ||| | | |||| |
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|
| T |
43526910 |
acaacaggaggaatggatggtaaagttgtaaacaatgatgttagagtgagatctcacatcgttgaaacatacatgggacacaaccaggaggtttgtgggc |
43526811 |
T |
|
| Q |
148 |
tcaagtggtctctcgatggccaacaattggctagtgggggaggcgataatatcgt-cacatatgggataggtctgctgcttcttcaaattcacggcccac |
246 |
Q |
| |
|
|||||||||| | | || ||||||||||| ||||| ||| ||||||| | || |||||||||||||| || | | |||||||||||||| | || |
|
|
| T |
43526810 |
tcaagtggtcaccctcaggacaacaattggcaagtggtggaaacgataatgttgttcacatatgggatagatccgtggtttcttcaaattcac---ctac |
43526714 |
T |
|
| Q |
247 |
gcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttcaggtggaggtgaaggt |
346 |
Q |
| |
|
|| |||||||||| |||||||||||||| |||| || | |||||| ||||||||||||| |||||| ||||| || | ||||| |||||||||| |||| |
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|
| T |
43526713 |
ccgatggcttcacaggtttgaggaacacatagctgctgtgaaggcactggcttggtgtccctttcagggtaatctactggcttctggtggaggtggaggt |
43526614 |
T |
|
| Q |
347 |
gatcaatgtgataagatgtggaacacgcacacgggtgcacaattgaattctgttga |
402 |
Q |
| |
|
||||| || |||| |||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
43526613 |
gatcattgcattaagctgtggaacacacacactggtgcgagattgaattctgttga |
43526558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 141 - 349
Target Start/End: Original strand, 18685637 - 18685843
Alignment:
| Q |
141 |
tgcgggctcaagtggtctctcgatggccaacaattggctagtgggggaggcgataatatcgt-cacatatgggataggtctgctgcttcttcaaattcac |
239 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| |||| |||||||| ||||||| |||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
18685637 |
tgcgggctcaaatggtcactcgatggaaaacaactggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattcac |
18685736 |
T |
|
| Q |
240 |
ggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttcaggtggagg |
339 |
Q |
| |
|
| || ||||||||| | | |||||| ||||||| |||| || | |||||| ||||||||||||| |||||| ||||| |||| ||||| |||||||| |
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|
| T |
18685737 |
---ctacccgttggctttataggtttgatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtggagg |
18685833 |
T |
|
| Q |
340 |
tgaaggtgat |
349 |
Q |
| |
|
| ||||||| |
|
|
| T |
18685834 |
cggaggtgat |
18685843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 249 - 402
Target Start/End: Complemental strand, 13119250 - 13119097
Alignment:
| Q |
249 |
gttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttcaggtggaggtgaaggtga |
348 |
Q |
| |
|
|||||||||||| |||| | ||||||| |||| || | |||||| ||||||||||||| |||||| |||| |||| ||||| |||||||||| |||||| |
|
|
| T |
13119250 |
gttggcttcacaggtttaatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcaggctaatctattggcttctggtggaggtggaggtga |
13119151 |
T |
|
| Q |
349 |
tcaatgtgataagatgtggaacacgcacacgggtgcacaattgaattctgttga |
402 |
Q |
| |
|
|| || |||| |||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
13119150 |
tcgttgcattaagctgtggaacacacacacgggtgcacgcttggattctgttga |
13119097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 402
Target Start/End: Original strand, 16694655 - 16694848
Alignment:
| Q |
206 |
atatgggataggtctgctgcttcttcaaattcacggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtc |
305 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| | || ||||||||||||| ||| ||||||||| | || || | |||||| |||||||||||| |
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|
| T |
16694655 |
atatgggataggtcagtggcttcttcaaattcac---ctacccgttggcttcacaggttcgaggaacacgaatctgctgtgaaggcactggcttggtgtc |
16694751 |
T |
|
| Q |
306 |
cgtttcagcgtaatttattagcttcaggtggaggtgaaggtgatcaatgtgataagatgtggaacacgcacacgggtgcacaattgaattctgttga |
402 |
Q |
| |
|
| || ||| ||||| |||| ||||| |||||||||| | ||||| || |||| |||||||||| || ||||||| | |||| || |||||||| |
|
|
| T |
16694752 |
ctttccagggtaatctattggcttctggtggaggtgcacttgatcgttgcattaagctgtggaacacacaaacgggtgaaaaattaaactctgttga |
16694848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 402
Target Start/End: Original strand, 17668891 - 17669084
Alignment:
| Q |
206 |
atatgggataggtctgctgcttcttcaaattcacggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtc |
305 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| | || ||||||||||||| ||| ||||||||| | || || | |||||| |||||||||||| |
|
|
| T |
17668891 |
atatgggataggtcagtggcttcttcaaattcac---ctacccgttggcttcacaggttcgaggaacacgaatctgctgtgaaggcactggcttggtgtc |
17668987 |
T |
|
| Q |
306 |
cgtttcagcgtaatttattagcttcaggtggaggtgaaggtgatcaatgtgataagatgtggaacacgcacacgggtgcacaattgaattctgttga |
402 |
Q |
| |
|
| || ||| ||||| |||| ||||| |||||||||| | ||||| || |||| |||||||||| || ||||||| | |||| || |||||||| |
|
|
| T |
17668988 |
ctttccagggtaatctattggcttctggtggaggtgcacttgatcgttgcattaagctgtggaacacacaaacgggtgaaaaattaaactctgttga |
17669084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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