View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3848_low_1 (Length: 459)
Name: NF3848_low_1
Description: NF3848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3848_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Complemental strand, 36503272 - 36502839
Alignment:
| Q |
10 |
ccaatccctctctctacttcctccgaaacatgccgtgatgttgagctacgagatatcacggttccaactgctcctgaagttgttaccaatgaaggacttg |
109 |
Q |
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| T |
36503272 |
ccaatccctctctctacttcctccgaaacatgccgtgatgttgagctacgaaatatcacggttccaactgctcctgaagttgttaccaatgaaggacttg |
36503173 |
T |
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| Q |
110 |
ttcaggaagcttggcagattgtcaatgatgactttcttgatactggtcgcaaccgttggtctcaagatacctggcaggtatcatcaatgttcatccacat |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36503172 |
ttcaggaagcttggcagattgtcgatgatgactttcttgatactggtcgcaaccgttggtctcaagatacctggcaggtatcatcaatgttcatccacat |
36503073 |
T |
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| Q |
210 |
caaaattttgannnnnnnnncct--tcatcttagaccagtttatgaatttctattatctgggttttggtttgtagcttgtacacattactttaccaactt |
307 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36503072 |
caaaattttgattttttttctctcttcatcttagaccagtttatgaatttctattatctgggttttggtttgtagcttgtacacattactttaccaactt |
36502973 |
T |
|
| Q |
308 |
aaagtttgctgctttatcttgtattgctacctgagtagctatattgcatcgtcactttatattgaaggcgtgtctaagtgtctgacatttactcgcactt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36502972 |
aaagtttgctgctttatcttgtattgctacctgagtagctatattgcatcgtcactttatattgaaggcgtgtctaagtgtctgacatttactcgcactt |
36502873 |
T |
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| Q |
408 |
tgtgatttttatgtaatcaaattattattttgtc |
441 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
36502872 |
tgtgatttgtatgtaatcaaattattattttgtc |
36502839 |
T |
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