View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3848_low_2 (Length: 349)
Name: NF3848_low_2
Description: NF3848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3848_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 4996073 - 4996389
Alignment:
| Q |
16 |
cattcttgtcccccaacatggatcttaaataatccatactaacatcttctaaggttgaggtctgcacgtttctatgttagtcgttgagattttgttttat |
115 |
Q |
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| T |
4996073 |
cattcttgtcccccaacatggatcttaaataatccatactaacatcttctaaggttgaggtctgcacgtttctatgttagtcgttgagattttgttttat |
4996172 |
T |
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| Q |
116 |
caagattttgataagggaacaagagtttgtttgaacggcacttataatataacttgtgatattggtttctcaattattacccttattannnnnnngagag |
215 |
Q |
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| T |
4996173 |
caagattttgataagggaacaagagtttgtttgaacggcacttataatataacttgtgatattggtttctcaattattacccttattatttttttgagag |
4996272 |
T |
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| Q |
216 |
atttggattctcaattttatttactcaataatccaacttgagataataaaatgaacaaaactttctagaacacgaattcttttaaccagttaaaaaaggc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4996273 |
atttggattctcaattttatttactcaataatccaacttgagataataaaatgaacaaaactttctagaacacgaattcttttaaccagttaaaaaaggc |
4996372 |
T |
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| Q |
316 |
ttaaatatgatattagt |
332 |
Q |
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||||||||||||||||| |
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| T |
4996373 |
ttaaatatgatattagt |
4996389 |
T |
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