View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3848_low_3 (Length: 310)
Name: NF3848_low_3
Description: NF3848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3848_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 43129655 - 43129934
Alignment:
| Q |
19 |
catcacgggcttctttagctccggttataaccgcccttaacggaaccgttagtttactcccaggtggaacggtttctggtgatatatattgtctccgtga |
118 |
Q |
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| T |
43129655 |
catcacgggcttctttagctccggttataactgcccttaacggaaccgttagtttactcccaggtggaacggtttctggtgatatattttgtctccgtga |
43129754 |
T |
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| Q |
119 |
tagaatggaaagcccaacactttggttgggcctggtgggctttattataatcgcgtattgtttagtaaaaaacgtgaaaggagcaatgatatacggaatc |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43129755 |
tagaatggaaagcccaacactctggttgggcctggtgggctttattataatcgcgtattgtttagtaaaaaacgtgaaaggagcaatgatatacggaatc |
43129854 |
T |
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| Q |
219 |
gttttcgtaacagcaatttcgtggtttcgaaacacgaaagtaacggcgtttcctaacagcgccgccggtgattcatctca |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43129855 |
gttttcgtaacagcaatttcgtggtttcgaaacacgaaagtaacggcgtttcctaacagcgccgccggtgattcagctca |
43129934 |
T |
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