View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3848_low_4 (Length: 252)
Name: NF3848_low_4
Description: NF3848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3848_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 39504203 - 39504097
Alignment:
| Q |
132 |
ttattagacttgccagctcaagaacatgatattgtgcttttatgtgatctggaagccattgatcgagaacagccgtactctttttggttgtcgtcactat |
231 |
Q |
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| T |
39504203 |
ttattagacttgccatttcaagaacatgatactgcacttttatgtgatctggaagccattgatcgagaacagccgcaccctttttggttgcagtcactat |
39504104 |
T |
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| Q |
232 |
cttttct |
238 |
Q |
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||||||| |
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| T |
39504103 |
cttttct |
39504097 |
T |
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