View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3849_high_10 (Length: 430)

Name: NF3849_high_10
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3849_high_10
NF3849_high_10
[»] chr3 (15 HSPs)
chr3 (54-411)||(49513975-49514332)
chr3 (20-54)||(10673343-10673377)
chr3 (20-54)||(10678458-10678492)
chr3 (20-54)||(1302650-1302684)
chr3 (20-54)||(4049572-4049606)
chr3 (20-54)||(4054706-4054740)
chr3 (20-54)||(5458417-5458451)
chr3 (20-54)||(5481893-5481927)
chr3 (20-54)||(8458076-8458110)
chr3 (20-54)||(8464515-8464549)
chr3 (20-54)||(10586587-10586621)
chr3 (20-54)||(10591700-10591734)
chr3 (20-54)||(31076807-31076841)
chr3 (20-54)||(31081912-31081946)
chr3 (20-54)||(33703005-33703039)
[»] chr4 (4 HSPs)
chr4 (286-412)||(27745785-27745911)
chr4 (298-367)||(38528633-38528702)
chr4 (20-54)||(35095793-35095827)
chr4 (177-245)||(27745690-27745758)
[»] chr6 (1 HSPs)
chr6 (20-55)||(21275537-21275572)
[»] scaffold0391 (2 HSPs)
scaffold0391 (20-54)||(16277-16311)
scaffold0391 (20-54)||(16372-16406)
[»] scaffold0223 (1 HSPs)
scaffold0223 (20-54)||(7382-7416)
[»] chr8 (4 HSPs)
chr8 (20-54)||(14315316-14315350)
chr8 (20-54)||(14319020-14319054)
chr8 (20-54)||(26982281-26982315)
chr8 (20-54)||(34107994-34108028)
[»] chr7 (8 HSPs)
chr7 (20-54)||(12851439-12851473)
chr7 (20-54)||(12856554-12856588)
chr7 (20-54)||(14610129-14610163)
chr7 (20-54)||(14615195-14615229)
chr7 (20-54)||(26050786-26050820)
chr7 (20-54)||(26055899-26055933)
chr7 (20-54)||(26060145-26060179)
chr7 (20-54)||(26065258-26065292)
[»] chr5 (4 HSPs)
chr5 (20-54)||(9872829-9872863)
chr5 (20-54)||(9877944-9877978)
chr5 (20-54)||(39908723-39908757)
chr5 (20-56)||(39903608-39903644)
[»] chr2 (3 HSPs)
chr2 (20-54)||(14917787-14917821)
chr2 (20-54)||(17720931-17720965)
chr2 (20-54)||(45120151-45120185)
[»] chr1 (2 HSPs)
chr1 (20-54)||(28574062-28574096)
chr1 (20-54)||(28598074-28598108)


Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 54 - 411
Target Start/End: Original strand, 49513975 - 49514332
Alignment:
Q  54 agtcaagacctatgtctcacgtgtaattcagattattaattttcttccacagcatagattttttatccgtaacgatgataagtatactcgtatccgcaat 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49513975 agtcaagacctatgtctcacgtgtaattcagattattaattttcttccacagcatagattttttatccgtaacgatgataagtatactcgtatccgcaat 49514074  T
Q  154 gtatatcttagaataataactttttctgcattcctggttcaatattgtattatttatgtttactatgccatatgtgcacctctcttttttcctcttttat 253  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49514075 gtatatcttagaattataactttttctgcattcctggttcaatattgtattatttatgtttactatgccatatgtgcacctctcttttttcctcttttat 49514174  T
Q  254 aatcctgcaacttagttccttatctgcctctgcaggttctatcatgctgtggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgta 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49514175 aatcctgcaacttagttccttatctgcctctgcaggttctatcatgctgtggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgta 49514274  T
Q  354 atggtcttgagtttttatctagtccacttcatttaaggtttattcctgacatttggga 411  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  49514275 atggtcttgagtttttatctagtccatttgatttaaggtttattcctgacatttggga 49514332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 10673343 - 10673377
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||||||||||||||    
T  10673343 cagcagcctcttcccaacaaacaaaatatataaca 10673377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 10678458 - 10678492
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||||||||||||||    
T  10678458 cagcagcctcttcccaacaaacaaaatatataaca 10678492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 1302650 - 1302684
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  1302650 cagcagcctcttcccaacaaacaagatatataaca 1302684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 4049606 - 4049572
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  4049606 cagcagcctcttcccaacaaacaagatatataaca 4049572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 4054740 - 4054706
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  4054740 cagcagcctcttcccaacaaacaagatatataaca 4054706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 5458417 - 5458451
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  5458417 cagcagcctcttcccaacaaacaagatatataaca 5458451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 5481893 - 5481927
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  5481893 cagcagcctcttcccaacaaacaagatatataaca 5481927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 8458110 - 8458076
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  8458110 cagcagcctcttcccaacaaacaagatatataaca 8458076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 8464549 - 8464515
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  8464549 cagcagcctcttcccaacaaacaagatatataaca 8464515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 10586587 - 10586621
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  10586587 cagcagcctcttcccaacaaacaagatatataaca 10586621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 10591700 - 10591734
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  10591700 cagcagcctcttcccaacaaacaagatatataaca 10591734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 31076807 - 31076841
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  31076807 cagcagcctcttcccaacaaacaagatatataaca 31076841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 31081912 - 31081946
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  31081912 cagcagcctcttcccaacaaacaagatatataaca 31081946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 33703005 - 33703039
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  33703005 cagcagcctcttcccaacaaacaagatatataaca 33703039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 286 - 412
Target Start/End: Original strand, 27745785 - 27745911
Alignment:
Q  286 caggttctatcatgctgtggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgtaatggtcttgagtttttatctagtccacttcat 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||    
T  27745785 caggttctatcatgctgtggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgtaatggtcttgactttttatccactccacttgat 27745884  T
Q  386 ttaaggtttattcctgacatttgggag 412  Q
    |||||||||||||||||| ||||||||    
T  27745885 ttaaggtttattcctgacttttgggag 27745911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 38528702 - 38528633
Alignment:
Q  298 tgctgtggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgtaatggtcttgagttt 367  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||||  | ||||| ||||||||    
T  38528702 tgctttggtggaatgtgactcaagtgccacagcagatcacatttacaaagaaaatgatggtgttgagttt 38528633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 35095827 - 35095793
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  35095827 cagcagcctcttcccaacaaacaagatatataaca 35095793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 27745690 - 27745758
Alignment:
Q  177 ttctgcattcctggttcaatattgtattatttatgtttactatgccatatgtgcacctctcttttttcc 245  Q
    |||||||||||||||||| |||| |  ||  |||||||||| || | |||||||| |||||||||||||    
T  27745690 ttctgcattcctggttcagtattttgatagatatgtttactgtgtcctatgtgcatctctcttttttcc 27745758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 21275572 - 21275537
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataacag 55  Q
    |||||||||||||||||||||||| |||||||||||    
T  21275572 cagcagcctcttcccaacaaacaagatatataacag 21275537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 16311 - 16277
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  16311 cagcagcctcttcccaacaaacaagatatataaca 16277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 16406 - 16372
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  16406 cagcagcctcttcccaacaaacaagatatataaca 16372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 7382 - 7416
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  7382 cagcagcctcttcccaacaaacaagatatataaca 7416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 14315316 - 14315350
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  14315316 cagcagcttcttcccaacaaacaaaatatataaca 14315350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 14319020 - 14319054
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    ||||||||||||||||||||| |||||||||||||    
T  14319020 cagcagcctcttcccaacaaataaaatatataaca 14319054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 26982281 - 26982315
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  26982281 cagcagcctcttcccaacaaacaagatatataaca 26982315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 34108028 - 34107994
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  34108028 cagcagcctcttcccaacaaacaagatatataaca 34107994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 12851473 - 12851439
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  12851473 cagcagcctcttcccaacaaacaagatatataaca 12851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 12856588 - 12856554
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  12856588 cagcagcctcttcccaacaaacaagatatataaca 12856554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 14610163 - 14610129
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  14610163 cagcagcctcttcccaacaaacaagatatataaca 14610129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 14615229 - 14615195
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  14615229 cagcagcctcttcccaacaaacaagatatataaca 14615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 26050820 - 26050786
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  26050820 cagcagcctcttcccaacaaacaagatatataaca 26050786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 26055933 - 26055899
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  26055933 cagcagcctcttcccaacaaacaagatatataaca 26055899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 26060179 - 26060145
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  26060179 cagcagcctcttcccaacaaacaagatatataaca 26060145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 26065292 - 26065258
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  26065292 cagcagcctcttcccaacaaacaagatatataaca 26065258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 9872829 - 9872863
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  9872829 cagcagcctcttcccaacaaacaagatatataaca 9872863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 9877944 - 9877978
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  9877944 cagcagcctcttcccaacaaacaagatatataaca 9877978  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 39908757 - 39908723
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  39908757 cagcagcctcttcccaacaaacaagatatataaca 39908723  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 39903644 - 39903608
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataacagt 56  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  39903644 cagcagcctctttccaacaaacaagatatataacagt 39903608  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 14917787 - 14917821
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  14917787 cagcagcctcttcccaacaaacaagatatataaca 14917821  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 17720931 - 17720965
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  17720931 cagcagcctcttcccaacaaacaagatatataaca 17720965  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 45120185 - 45120151
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  45120185 cagcagcctcttcccaacaaacaatatatataaca 45120151  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 28574096 - 28574062
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  28574096 cagcagcctcttcccaacaaacaagatatataaca 28574062  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 28598108 - 28598074
Alignment:
Q  20 cagcagcctcttcccaacaaacaaaatatataaca 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  28598108 cagcagcctcttcccaacaaacaagatatataaca 28598074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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