View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_high_12 (Length: 419)
Name: NF3849_high_12
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 45 - 411
Target Start/End: Original strand, 26809488 - 26809854
Alignment:
| Q |
45 |
actttgaatgttgagaacttgaatttctcggtgttcccttttcaggtcaagtaatcttttccacttctccacaagaacattactttgactgcccatacca |
144 |
Q |
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| T |
26809488 |
actttgaatgttgagaacttgaatttcccggtgttccctttccaggtcaagtaatcttttccacttctccacaagaacattactttgactgcccatacca |
26809587 |
T |
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| Q |
145 |
actgagctctgagagggttggccaaacataccttgatgcaatggtaacatttagcaattgtaactaatattatatcattaacttaatttatttttcctat |
244 |
Q |
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| T |
26809588 |
actgagctctgagagggttggccaaacataccttgatgcaatggtaacatttagcaattgtaactactattatatcattaacttaatttatttttcctat |
26809687 |
T |
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| Q |
245 |
tcctctatctgtcttcacttcactattcaaaataagcaagatttgtgtatgtgaaatagttaatgaagagaaaagggaaaataagcacagaccgcaacca |
344 |
Q |
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| T |
26809688 |
tcctctatctgtcttcacttcactattcaaaataagcaagatttgtgtatgtgaaatagttaatggagagaaaagggaaaataagcacagaccgcaacca |
26809787 |
T |
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| Q |
345 |
cctaaactttcttgctaagattgagacagacaactaaatgactaatattaatactcctagaataatc |
411 |
Q |
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| T |
26809788 |
cctaaactttcttgctaagattgagacaggcaactaaataactaatattaatactcctagaataatc |
26809854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 40841813 - 40842072
Alignment:
| Q |
29 |
tttcctcgtcgaaaacactttgaatgttgagaacttgaatttctcggtgttcccttttcaggtcaagtaatcttttccacttctccacaagaacattact |
128 |
Q |
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| T |
40841813 |
tttcctcgtcgaaaacactttgaatgttgagaacttgaatttctcggtgttcccttttcaggtcaagtaatcttttccacttctccacaagaacattact |
40841912 |
T |
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| Q |
129 |
ttgactgcccataccaactgagctctgagagggttggccaaacataccttgatgcaatggtaacatttagcaattgtaactaatattatatcattaactt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||||||||| |
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| T |
40841913 |
ttgactgcccataccaactgagctctgagagggttggccaaacatacctcgatgcaacggtaacatttagcaattgtaagtactattatatcattaactt |
40842012 |
T |
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| Q |
229 |
aatttatttttcctattcctctatctgtcttcacttcactattcaaaataagcaagattt |
288 |
Q |
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| T |
40842013 |
aatttccttttcctactcctctatctgtcttcacttcactcttcaaaataagcaagattt |
40842072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 285 - 383
Target Start/End: Original strand, 40842094 - 40842192
Alignment:
| Q |
285 |
atttgtgtatgtgaaatagttaatgaagagaaaagggaaaataagcacagaccgcaaccacctaaactttcttgctaagattgagacagacaactaaat |
383 |
Q |
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| T |
40842094 |
atttgtgtatgtgaaatagtcattgaagagaaaagggaaaatatgcacagaaagcaaccacctaaactttcatgctcagatttagacagacaactaaat |
40842192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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