View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3849_high_2 (Length: 570)

Name: NF3849_high_2
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3849_high_2
NF3849_high_2
[»] chr3 (2 HSPs)
chr3 (9-570)||(43489606-43490167)
chr3 (37-101)||(45013921-45013985)
[»] chr8 (1 HSPs)
chr8 (9-151)||(38653101-38653243)
[»] chr6 (3 HSPs)
chr6 (9-151)||(13409913-13410055)
chr6 (39-102)||(4038752-4038815)
chr6 (31-101)||(10554652-10554722)
[»] chr1 (1 HSPs)
chr1 (20-150)||(44331736-44331866)
[»] chr4 (2 HSPs)
chr4 (38-98)||(1726250-1726310)
chr4 (46-98)||(2428679-2428731)
[»] chr2 (1 HSPs)
chr2 (46-98)||(44648686-44648738)
[»] chr7 (3 HSPs)
chr7 (39-101)||(3160284-3160346)
chr7 (31-73)||(6568948-6568990)
chr7 (31-73)||(6583107-6583149)


Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 9 - 570
Target Start/End: Complemental strand, 43490167 - 43489606
Alignment:
Q  9 agcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43490167 agcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgctcttcgt 43490068  T
Q  109 tttagaggcaacaaagccaaactcaatttccctgaaaatgttacacttcgtaaccctccaccagctactactactactcaatggaacgtttcgaattcac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490067 tttagaggcaacaaagccaaactcaatttccctgaaaatgttacacttcgtaaccctccaccagctactactactactcaatggaacgtttcgaattcac 43489968  T
Q  209 cgagttcgattgtttctattacaacttctactgatcctgttgttcatactagaccttttcctaactcttctcagcattcgacaaacttttatgatcgttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489967 cgagttcgattgtttctattacaacttctactgatcctgttgttcatactagaccttttcctaactcttctcagcattcgacaaacttttatgatcgttt 43489868  T
Q  309 tcagttttcgggtattcctgctccaaggaatatttatgatgataatgtgattagggcttcttctgtggcttctcatctacaatcttcatcatcgtcgcca 408  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43489867 tcagttttcgggtattcctcctgcaaggaatgtttatgatgataatgtgattagggcttcttctatggcttctcatctacaatcttcatcatcgtcgcca 43489768  T
Q  409 gcttcttctttgtcatcatcttcttctgcatttgtttcttctatgcagggcaatacttcagtttcctcgtatttttctactcagttgccaccttggtcta 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489767 gcttcttctttgtcatcatcttcttctgcatttgtttcttctatgcagggcaatacttcagtttcctcgtatttttctactcagttgccaccttggtcta 43489668  T
Q  509 cttcggatcatagctcttctccttcttgatgattaattttcaatgaatcagaggcaaaaaca 570  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43489667 cttcggatcagagctcttctccttcttgatgattaattttcaatgaatcacaggcaaaaaca 43489606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 45013985 - 45013921
Alignment:
Q  37 gcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgc 101  Q
    ||||| |||||| |||||||||||||||| ||||| ||||| ||    |||||||||||||||||    
T  45013985 gcaagggtatggctaggaacatttgaaacggctgaggctgcagccgttgcatatgatgaagctgc 45013921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 38653243 - 38653101
Alignment:
Q  9 agcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgt 108  Q
    |||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||| ||| |||| ||| |||||| ||||| |  | |||    
T  38653243 agcagagataagagatcctttcaaagctacaagagtatggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagcttcattgcgt 38653144  T
Q  109 tttagaggcaacaaagccaaactcaatttccctgaaaatgtta 151  Q
    |||||||| |||||||| |||||||| ||||||||||||||||    
T  38653143 tttagaggaaacaaagcaaaactcaacttccctgaaaatgtta 38653101  T

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Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 13409913 - 13410055
Alignment:
Q  9 agcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgt 108  Q
    |||||| ||||||||||||  |||||||  |||||||||| |||||||||| || ||||| |||||||| ||||| || ||||||||||||||  |  |     
T  13409913 agcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagcagaagctgcagctagggcttatgatgaagctgcattgaga 13410012  T
Q  109 tttagaggcaacaaagccaaactcaatttccctgaaaatgtta 151  Q
    || ||||| | || ||| |||||||| ||||||||||||||||    
T  13410013 ttcagaggaagcagagcaaaactcaacttccctgaaaatgtta 13410055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 4038752 - 4038815
Alignment:
Q  39 aagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgct 102  Q
    |||||| ||||||||||| ||||| ||||||||||  ||||||||||| |||||||| ||||||    
T  4038752 aagagtttggttaggaacttttgatacagctgaagaagctgctagagcttatgatgaggctgct 4038815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 10554652 - 10554722
Alignment:
Q  31 aaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgc 101  Q
    |||| ||||||||| ||| | || || |||||||||||||||||||| ||||  || ||||||||||||||    
T  10554652 aaaggagcaagagtgtggcttggcacctttgaaacagctgaagctgcagctactgcttatgatgaagctgc 10554722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 44331866 - 44331736
Alignment:
Q  20 gagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaa 119  Q
    ||||||||  ||||||||||||||||||| | |||||||||||||| || |||||||| || ||||| || |||||||||||  |  | || ||||| ||    
T  44331866 gagatccacacaaagcagcaagagtatggcttggaacatttgaaactgcagaagctgcagcaagagcttacgatgaagctgcattaagattcagaggaaa 44331767  T
Q  120 caaagccaaactcaatttccctgaaaatgtt 150  Q
    || ||| |||||||| |||||||||||||||    
T  44331766 cagagcgaaactcaacttccctgaaaatgtt 44331736  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 1726250 - 1726310
Alignment:
Q  38 caagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc 98  Q
    ||||| ||||||||||||||||||||||||| |||| ||| || |||||||||||||||||    
T  1726250 caagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 1726310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 2428731 - 2428679
Alignment:
Q  46 tggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc 98  Q
    ||||||||||||||||| ||||||||||  || ||||||||||||||||||||    
T  2428731 tggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagc 2428679  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 44648738 - 44648686
Alignment:
Q  46 tggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc 98  Q
    ||||||||||||||||||||||||||||  || |||| |||||||||||||||    
T  44648738 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 44648686  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 3160284 - 3160346
Alignment:
Q  39 aagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgc 101  Q
    |||||| ||||||||||| ||||| ||||||||||  ||||| ||||| ||||||||||||||    
T  3160284 aagagtttggttaggaacttttgatacagctgaagaagctgcaagagcctatgatgaagctgc 3160346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 6568948 - 6568990
Alignment:
Q  31 aaagcagcaagagtatggttaggaacatttgaaacagctgaag 73  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||    
T  6568948 aaagcagctagagtttggttaggaacatttgatacagctgaag 6568990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 6583107 - 6583149
Alignment:
Q  31 aaagcagcaagagtatggttaggaacatttgaaacagctgaag 73  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||    
T  6583107 aaagcagctagagtttggttaggaacatttgacacagctgaag 6583149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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