View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_high_20 (Length: 339)
Name: NF3849_high_20
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_high_20 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 48788290 - 48788620
Alignment:
| Q |
9 |
tatgatcaacataaagtccaccagcccatttttcagttctattataaggtgtgatccaaacattataattagtgaaagcaccacgtatttgtgggtaatc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48788290 |
tatgatcaacataaagtccaccagcccatttttcagttctattataaggtgtgatccaaacattataattagtgaaagcaccacgtatttgtgggtaatc |
48788389 |
T |
|
| Q |
109 |
atcttcggttagaagtggatgagctggaattgccggaatcaaacggtatccgatgtggtttccgatcgcggnnnnnnngtttggattaatcacgactagt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48788390 |
atcttcggttagaagtggatgagctggaattgccggaatcaaacggtatccgatgtggtttccgatcgcggtttttttgtttggattaatcacgactagt |
48788489 |
T |
|
| Q |
209 |
tcagccggggtaggtccaattgtgatttttgcatctgattctgtcttagcagtttgagtctcagtgatccagtaactctttcttgttgaacttccataag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |
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| T |
48788490 |
tcagccggggtaggtccaattgtgatttttgcatctgattctgtcttagcagtttgagtctcagtggtccagtaactctttctctttgaacttccatcag |
48788589 |
T |
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| Q |
309 |
tgattcttactgtctttaaaattgatttctc |
339 |
Q |
| |
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|||||||||| ||||||||| ||| |||||| |
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| T |
48788590 |
tgattcttacagtctttaaacttgttttctc |
48788620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 15824325 - 15824655
Alignment:
| Q |
9 |
tatgatcaacataaagtccaccagcccatttttcagttctattataaggtgtgatccaaacattataattagtgaaagcaccacgtatttgtgggtaatc |
108 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||| |||||||| || ||||| |
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| T |
15824325 |
tatgatcaacatagagtccaccagcccatttttcagttctattataaggtgtgacccaaacattataattggtaaatgcaccgcgtatttgcggataatc |
15824424 |
T |
|
| Q |
109 |
atcttcggttagaagtggatgagctggaattgccggaatcaaacggtatccgatgtggtttccgatcgcggnnnnnnngtttggattaatcacgactagt |
208 |
Q |
| |
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|||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| | || | ||| | |||||||||||||||| |
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| T |
15824425 |
atcttcagttagaagtgaatgagcaggaattgctggaatcaaacggtatccgatgtggtttccaactgcagtttttttgttcgaattaatcacgactagt |
15824524 |
T |
|
| Q |
209 |
tcagccggggtaggtccaattgtgatttttgcatctgattctgtcttagcagtttgagtctcagtgatccagtaactctttcttgttgaacttccataag |
308 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| |||||||||||| | |
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| T |
15824525 |
tcagccggggcagaaccaattgtgatttttgcatctgattcagtcttagcagtttgagtctcagttgtccaataactctttctttttgaacttccatctg |
15824624 |
T |
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| Q |
309 |
tgattcttactgtctttaaaattgatttctc |
339 |
Q |
| |
|
|||||||||| || |||||| ||| |||||| |
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| T |
15824625 |
tgattcttacagtttttaaatttgttttctc |
15824655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 48835617 - 48835287
Alignment:
| Q |
9 |
tatgatcaacataaagtccaccagcccatttttcagttctattataaggtgtgatccaaacattataattagtgaaagcaccacgtatttgtgggtaatc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||||||| ||||| |
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| T |
48835617 |
tatgatcaacataaagtccaccagcccatttttcagttctattataaggtgcgacccaaacattataattagtaaatgcaccacgtatttgtggataatc |
48835518 |
T |
|
| Q |
109 |
atcttcggttagaagtggatgagctggaattgccggaatcaaacggtatccgatgtggtttccgatcgcggnnnnnnngtttggattaatcacgactagt |
208 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| ||||||||||||||||| | | || || | | | ||||||||||| | | ||| |
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| T |
48835517 |
atcttcagttaaaagtggatgagctggaattgctggaatcaaacggtatccaacttcattaccaacaacagtttttttgtttggattaacaaatgcaagt |
48835418 |
T |
|
| Q |
209 |
tcagccggggtaggtccaattgtgatttttgcatctgattctgtcttagcagtttgagtctcagtgatccagtaactctttcttgttgaacttccataag |
308 |
Q |
| |
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||| | |||| | | |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| || |
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| T |
48835417 |
tcacctggggcaagcccaattgttatttttgcatctgattctgtcttaacagtttgagtctcaatgatccagtaactctttctctttgaacttccatcag |
48835318 |
T |
|
| Q |
309 |
tgattcttactgtctttaaaattgatttctc |
339 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |
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|
| T |
48835317 |
tgattcttactgtctttaaacttgttttctc |
48835287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 48814725 - 48815055
Alignment:
| Q |
9 |
tatgatcaacataaagtccaccagcccatttttcagttctattataaggtgtgatccaaacattataattagtgaaagcaccacgtatttgtgggtaatc |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||| |
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|
| T |
48814725 |
tatgatcaacatatagtccaccagcccatttttcagttctattataaggtgtgacccaaacattataattagtaaatgcaccacgtatttgtggataatc |
48814824 |
T |
|
| Q |
109 |
atcttcggttagaagtggatgagctggaattgccggaatcaaacggtatccgatgtggtttccgatcgcggnnnnnnngtttggattaatcacgactagt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||| || |||||| | | ||||||||| | | | ||| |
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| T |
48814825 |
atcttcggttagaagtggatgagctggaattgctgggatcaaacggtatccgacgtcgtttccaacgatagtttttttgtttggattgacaattgcaagt |
48814924 |
T |
|
| Q |
209 |
tcagccggggtaggtccaattgtgatttttgcatctgattctgtcttagcagtttgagtctcagtgatccagtaactctttcttgttgaacttccataag |
308 |
Q |
| |
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||| | |||| | | || | || ||||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||||| |||||||||||| | |
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| T |
48814925 |
tcacctggggcaagccctagagtaatttttgcatctgattcagtcttagcaatttgagtctcagtggtccaataactctttctctttgaacttccatcgg |
48815024 |
T |
|
| Q |
309 |
tgattcttactgtctttaaaattgatttctc |
339 |
Q |
| |
|
||||| |||| || |||||| ||| |||||| |
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| T |
48815025 |
tgatttttacggtttttaaacttgttttctc |
48815055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 47103664 - 47103766
Alignment:
| Q |
9 |
tatgatcaacataaagtccaccagcccatttttcagttctattataaggtgtgatccaaacattataattagtgaaagcaccacgtatttgtgggtaatc |
108 |
Q |
| |
|
||||||||||||| | ||| || |||||||| |||||| | || || ||||||| ||| ||||||||||||||||||||||| | |||||||| ||||| |
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| T |
47103664 |
tatgatcaacatataatcctcctgcccatttctcagttttgttgtatggtgtgacccacacattataattagtgaaagcacctctaatttgtggataatc |
47103763 |
T |
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| Q |
109 |
atc |
111 |
Q |
| |
|
||| |
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|
| T |
47103764 |
atc |
47103766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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