View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3849_high_30 (Length: 259)

Name: NF3849_high_30
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3849_high_30
NF3849_high_30
[»] chr8 (2 HSPs)
chr8 (124-239)||(31661511-31661626)
chr8 (1-58)||(31661387-31661445)
[»] chr1 (1 HSPs)
chr1 (131-229)||(28190485-28190583)
[»] chr4 (6 HSPs)
chr4 (130-199)||(29010105-29010174)
chr4 (131-227)||(22579232-22579328)
chr4 (131-199)||(24894750-24894818)
chr4 (131-198)||(47533822-47533889)
chr4 (131-191)||(9675061-9675121)
chr4 (132-212)||(55520939-55521019)
[»] chr6 (1 HSPs)
chr6 (131-235)||(32549404-32549508)
[»] chr7 (3 HSPs)
chr7 (131-213)||(33487183-33487265)
chr7 (131-238)||(35582264-35582372)
chr7 (140-198)||(42082748-42082806)
[»] chr3 (2 HSPs)
chr3 (131-199)||(1699932-1700000)
chr3 (131-239)||(40362032-40362140)
[»] chr2 (2 HSPs)
chr2 (129-169)||(35426520-35426560)
chr2 (131-183)||(28814797-28814849)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 31661511 - 31661626
Alignment:
Q  124 ctttgaggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgat 223  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  ||||    
T  31661511 ctttgaggaaaattgtttttcgcatttcactcaatgataagaaacactatgaaatgacaattttaacctcaaattcaatcaatagttaaccaccattgat 31661610  T
Q  224 taaaatacatcgacag 239  Q
    ||||||||||| ||||    
T  31661611 taaaatacatcaacag 31661626  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31661387 - 31661445
Alignment:
Q  1 tagcaattattttttctaaggaacaca-ttttttcccttagaaatagaaacatggaaca 58  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  31661387 tagcaattattttttctaaggaacacatttttttcccttataaatagaaacatggaaca 31661445  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 28190485 - 28190583
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaat 229  Q
    |||||||||||||| || ||||| ||| |  |||||||||  ||||||||||| ||||||||||||||  |||| |||||||| | ||||| |||||||    
T  28190485 gaaaattgcttttcccacttcacacaaagcaaagaaacaccatgaaatgacaagtttaacctcaaatttcatcagtagttaactaccgctggttaaaat 28190583  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 29010174 - 29010105
Alignment:
Q  130 ggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattc 199  Q
    |||||| ||||||||||| |||| |||||| ||||||||||  | ||||||||| |||||||||||||||    
T  29010174 ggaaaaatgcttttcacacttcattcaatgctaagaaacaccataaaatgacaaatttaacctcaaattc 29010105  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 22579232 - 22579328
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaa 227  Q
    ||||||| ||||||| | ||||||||||| ||| ||||||| | |||||  || ||||||||||||||| ||||| ||| ||| | ||||| |||||    
T  22579232 gaaaattacttttcatacttcactcaatgctaaaaaacactataaaatggtaaatttaacctcaaattctatcaacagtgaactaccgctggttaaa 22579328  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 24894818 - 24894750
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattc 199  Q
    |||||||| ||||| || ||||| ||||| |||||||||| || |||| |||| |||||||||||||||    
T  24894818 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattc 24894750  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 47533889 - 47533822
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaatt 198  Q
    ||||||||| ||||||| ||||| ||||| ||||||||||  | |||||| || ||||||||||||||    
T  47533889 gaaaattgcctttcacacttcacgcaatgctaagaaacacaattaaatgataaatttaacctcaaatt 47533822  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 9675121 - 9675061
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacc 191  Q
    |||||||||||||| || ||||| ||| | ||||||||||| |||||| |||| |||||||    
T  9675121 gaaaattgcttttctcacttcacacaaagttaagaaacactatgaaatcacaagtttaacc 9675061  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 55520939 - 55521019
Alignment:
Q  132 aaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaa 212  Q
    ||||||| ||||| || ||||| ||| | ||||||||||  ||||||||||| |||| || ||||||  ||||||||||||    
T  55520939 aaaattgtttttcccacttcacacaaagctaagaaacaccatgaaatgacaagtttagccccaaattacatcaatagttaa 55521019  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 32549404 - 32549508
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 230  Q
    |||||||| |||||||||||||| ||||| ||||||||||  | ||||||||| ||||||| ||||||  |||  |||||||| ||||  | |||||||     
T  32549404 gaaaattgtttttcacatttcacacaatgctaagaaacaccattaaatgacaagtttaaccccaaatttcatcggtagttaactatcgtcggttaaaatt 32549503  T
Q  231 catcg 235  Q
    |||||    
T  32549504 catcg 32549508  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 33487183 - 33487265
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaac 213  Q
    ||||||||||||||||| || |||||||| ||||||||||  | |||| |||| |||||| |||||||| |||  ||||||||    
T  33487183 gaaaattgcttttcacactttactcaatgctaagaaacaccataaaataacaaatttaacttcaaattctatcggtagttaac 33487265  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 35582372 - 35582264
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaa-ttttaacctcaaattcaatcaatagttaaccatcgctgattaaaat 229  Q
    |||||||||||||| || ||||| | | | ||||||||||| |||||||| || |||||||||||||||| ||   |||||||| | ||| |||||||||    
T  35582372 gaaaattgcttttcccacttcacacgaagctaagaaacactatgaaatgataagttttaacctcaaattctattggtagttaactaccgccgattaaaat 35582273  T
Q  230 acatcgaca 238  Q
     || |||||    
T  35582272 tcagcgaca 35582264  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 42082748 - 42082806
Alignment:
Q  140 ttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaatt 198  Q
    |||||||| |||| || ||| ||||||||||  ||||||||||| ||||||||||||||    
T  42082748 ttttcacacttcattcgatgctaagaaacaccatgaaatgacaaatttaacctcaaatt 42082806  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 1699932 - 1700000
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattc 199  Q
    ||||||||  ||||||| ||||| ||||| ||||||||||  |||||| |||| |||||||||||||||    
T  1699932 gaaaattgtctttcacacttcacacaatgctaagaaacaccatgaaataacaaatttaacctcaaattc 1700000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 40362140 - 40362032
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 230  Q
    ||||||||| ||||||||||||  ||||| ||||||||||  | |||||| || ||||||| ||||||  ||  ||||||||| | ||  | |||||||     
T  40362140 gaaaattgcctttcacatttcatacaatgctaagaaacaccataaaatgaaaaatttaaccccaaatttcattgatagttaactaccgtcggttaaaatc 40362041  T
Q  231 catcgacag 239  Q
    |||||||||    
T  40362040 catcgacag 40362032  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 35426560 - 35426520
Alignment:
Q  129 aggaaaattgcttttcacatttcactcaatgataagaaaca 169  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  35426560 aggaaaattgcttttcacacttcactcaatgctaagaaaca 35426520  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 28814849 - 28814797
Alignment:
Q  131 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaa 183  Q
    ||||||||||||||| | ||||||||||| ||| ||||||  |||||||||||    
T  28814849 gaaaattgcttttcaaacttcactcaatgctaataaacaccatgaaatgacaa 28814797  T

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