View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_high_33 (Length: 240)
Name: NF3849_high_33
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_high_33 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39777020 - 39776781
Alignment:
| Q |
1 |
cataggatcaatattctcaatagaacaaataatcacaacattatcagctaaatctctcataacctcaagctcatattccttccaacccaacaatgatttc |
100 |
Q |
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| T |
39777020 |
cataggatcaatattctcaatagaacaaataatcacaacattatcagctaaatctctcataacctcaagctcatattccttccaacccaacaatgatttc |
39776921 |
T |
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| Q |
101 |
tcaatcaaaacctgattagtcaaactagcagctatcccagctttacaaatctccatcaaatcttcgcgattatatgcaatcccaccaccggttcctccca |
200 |
Q |
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| T |
39776920 |
tcaatcaaaacctgattagtcaaactagcagctatcccagctttacaaatctccatcaaatcttcgcgattatatgcaatcccaccaccggttcctccca |
39776821 |
T |
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| Q |
201 |
gcgtaaaagccggtctaacaatcaaaggaaaatcgatttg |
240 |
Q |
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| T |
39776820 |
gcgtaaaagccggtctaacaatcaaaggaaactcgatttg |
39776781 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 20160163 - 20160236
Alignment:
| Q |
5 |
ggatcaatattctcaatagaacaaataatcacaacattatcagctaaatctctcataacctcaagctcatattc |
78 |
Q |
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||||||||||||||||| |||||||||| || ||||||||| ||||||| | | ||||||||||||||||||| |
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| T |
20160163 |
ggatcaatattctcaatcaaacaaataataactacattatcaactaaatcccccttaacctcaagctcatattc |
20160236 |
T |
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