View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_high_4 (Length: 511)
Name: NF3849_high_4
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_high_4 |
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| [»] scaffold1333 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 6241580 - 6241223
Alignment:
| Q |
18 |
aaatttcttaggtgatagttttgcctgtgatagagactaacttttaaaaagaaagaaaacaactttacaagtctcaagtatccacttacaagataacttt |
117 |
Q |
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| T |
6241580 |
aaatttcttaggtgatagttttgcctgtgatagagactaatttttaaaaagaaaaaaaacaactttacaagtctcaagtatccacttacaagataacttt |
6241481 |
T |
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| Q |
118 |
gttctatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatatgt------aataaaaatgagtctctaagatgtagacaaggaaat |
211 |
Q |
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| T |
6241480 |
gttcaatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatc-tttatatgtaataaaaataaaaatgagtctctaagatgtagacaaggaaat |
6241382 |
T |
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| Q |
212 |
aagatattgcaccgtttgacttatattccaccatttgagtttacacatatatacatggctaatattagggtagtcctacattgttaaacattttttatga |
311 |
Q |
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| T |
6241381 |
aagatattgcaccgtttgacttgtattccaccatttgagtttacacatatatacatggctaatattagggtagtcctacattgtt--acat--------- |
6241293 |
T |
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| Q |
312 |
tgtatacatacagtaattattagatatgatgtaaaatattttgtactgaaaaacataagatatgatttaaaatagag |
388 |
Q |
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| T |
6241292 |
-------atacagtaattattagatatgatgtaaaatattttgtactgaaaaacataagatatgatttaaaatagag |
6241223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 6212653 - 6212301
Alignment:
| Q |
18 |
aaatttcttaggtgatagttttgcctgtgatagagactaacttttaaaaagaaagaaaacaactttacaagtctcaagtatccacttacaagataacttt |
117 |
Q |
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| T |
6212653 |
aaatttcttaggtgatagttttgcctgtgataaagactaatttttaaaaagaaaaaaaacaactttacaagtctcaagtatccacttacaagataacttt |
6212554 |
T |
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| Q |
118 |
gttctatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatatgtaataaaaatgagtctctaag--atgtagacaaggaaataaga |
215 |
Q |
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| T |
6212553 |
gttctatagaagggtttaaaacgtattaaaccgcaaaagcgcgtcatcttttatatgtaataaaaatgagtctctaagatatgtagacaaggaaataaga |
6212454 |
T |
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| Q |
216 |
tattgcaccgtttgact----tatattccaccatttgagtttacacatatatacatggctaatattagggtagtcctacattgttaaacattttttatga |
311 |
Q |
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| T |
6212453 |
tattgcaccgtttgacttatatatattccaccatttgag-ttacacatatatacatggctaatattagggtagtcctacattgtt--acat--------- |
6212366 |
T |
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| Q |
312 |
tgtatacatacagtaattattagatatgatgtaaaatattttgtactgaaaaacataagatatgatttaaaa |
383 |
Q |
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| T |
6212365 |
-------atacagtaattattagatatgatgtaaaatattttgtaatgaaaaacattagatatgatttaaaa |
6212301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 148 - 94
Alignment:
| Q |
247 |
tgagtttacacatatatacatggctaatattagggtagtcctacattgttaaaca |
301 |
Q |
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| T |
148 |
tgagtttacacacacatacatggctaatatttggctagttttacattgttaaaca |
94 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 250 - 201
Alignment:
| Q |
125 |
agaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatatg |
174 |
Q |
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| T |
250 |
agaatggtttcgaacgtattaaaccccaaaagcatgtcatcttttatatg |
201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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