View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3849_high_8 (Length: 450)

Name: NF3849_high_8
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3849_high_8
NF3849_high_8
[»] chr1 (18 HSPs)
chr1 (20-440)||(6367028-6367448)
chr1 (43-166)||(6428518-6428644)
chr1 (43-149)||(6421189-6421295)
chr1 (46-181)||(6380821-6380958)
chr1 (43-181)||(6372925-6373064)
chr1 (85-179)||(6359443-6359538)
chr1 (45-181)||(6359681-6359812)
chr1 (193-264)||(6404515-6404586)
chr1 (269-440)||(6372578-6372744)
chr1 (128-181)||(6349291-6349344)
chr1 (94-181)||(6399887-6399972)
chr1 (130-181)||(6404613-6404664)
chr1 (267-369)||(6428234-6428336)
chr1 (263-368)||(6359203-6359308)
chr1 (196-261)||(6391503-6391568)
chr1 (131-178)||(6391613-6391660)
chr1 (210-264)||(6399786-6399840)
chr1 (194-247)||(6421075-6421128)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 6367448 - 6367028
Alignment:
Q  20 cttaggaccatggagttatcttcttacaaacttcatagcaaagcatgtgcagcacaaaaaccatgacatcagaaagttatagttactaaataagttataa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6367448 cttaggaccatggagttatcttcttacaaacttcatagcaaagcatgtgcagcacaaaaaccatgacatcagaaagttatagttactaaatatgttataa 6367349  T
Q  120 ttcatacagtaaaagttaatggaaaagaaagaaatattttaacctgagcgttccttgttacacgcgctctcccaagaattagcttctttcggtgttcttg 219  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6367348 ttcatatagtaaaagttaatggaaaagaaagaaatattttaacctgagtgttccttgttacacgcgctctcccaagaattagcttctttcggtgttcttg 6367249  T
Q  220 ctcgcttcttagtctggacaggtgtaacatctataacaggcttctcaggggaagcagatttaaaaccagcattaaaagcttttccattagtagtttcaaa 319  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6367248 ctcgcttcttagtctggacaggtgtaacttctataacaggcttctcaggggaagcagatttaaaaccagcattaaaagtttttccattagtagtttcaaa 6367149  T
Q  320 agttagagctaaaggtgttcttatactgtcaagactccgaaatttctcaggtgaagaacattcaacactgccgttagtagtattgacttcttcaacagat 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6367148 agttagagctaaaggtgttcttatactgtcaagactccgaaatttctcaggtgaagcacattcaacactgccgttagtagtattgacttcttcaacagat 6367049  T
Q  420 ttgtttgaattctttcctttg 440  Q
    |||||||||||||||||||||    
T  6367048 ttgtttgaattctttcctttg 6367028  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 6428644 - 6428518
Alignment:
Q  43 ttacaaacttcatagcaaagcatgtgcagcaca---aaaaccatgacatcagaaagttatagttactaaataagttataattcatacagtaaaagttaat 139  Q
    |||||||||||||||||||||||||||||||||   || | ||||| |||||||||||||||||||||||||| ||| |||| ||  | |||||||||||    
T  6428644 ttacaaacttcatagcaaagcatgtgcagcacatataataacatgagatcagaaagttatagttactaaataatttagaattaatgtactaaaagttaat 6428545  T
Q  140 ggaaaagaaagaaatattttaacctga 166  Q
    | |||||||||||||||||||||||||    
T  6428544 gaaaaagaaagaaatattttaacctga 6428518  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 6421295 - 6421189
Alignment:
Q  43 ttacaaacttcatagcaaagcatgtgcagcacaaaaaccatgacatcagaaagttatagttactaaataagttataattcatacagtaaaagttaatgga 142  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  |||| ||  ||||||| ||||||||    
T  6421295 ttacaaacttcatagcatagcatgtgcagcacaaaaaccatgacatcagaaagttatagatactaaataagctggaattaatgtagtaaaatttaatgga 6421196  T
Q  143 aaagaaa 149  Q
    |||||||    
T  6421195 aaagaaa 6421189  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 6380958 - 6380821
Alignment:
Q  46 caaacttcatagcaaagcatgtgcagcacaaa--aaccatgacatcagaaagttatagttactaaataagttataattcatacagtaaaagttaatggaa 143  Q
    ||||| ||||| | ||||||||| ||||||||  |||||||||||||||||||| || | ||| || |  ||| |||| ||| |||||||||||||||||    
T  6380958 caaacatcataccgaagcatgtgtagcacaaagaaaccatgacatcagaaagttttattcacttaacagtttaaaattaatatagtaaaagttaatggaa 6380859  T
Q  144 aagaaagaaatattttaacctgagcgttccttgttaca 181  Q
     ||||||||||||||||||| | | |||||||||||||    
T  6380858 cagaaagaaatattttaaccagggtgttccttgttaca 6380821  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 6373064 - 6372925
Alignment:
Q  43 ttacaaacttcatagcaaagcatgtgcagcacaaaaacc--atgacatcagaaagttatagttactaaataagttataattcatacagtaaaagttaatg 140  Q
    |||||| |||||||| ||||||||||||||| ||||| |  ||| |||||||| ||||||||||||||||||| || |||  ||| |||||||||||||     
T  6373064 ttacaatcttcatagtaaagcatgtgcagcataaaaaaccgatggcatcagaatgttatagttactaaataagctagaatcaatatagtaaaagttaatc 6372965  T
Q  141 gaaaagaaagaaatattttaacctgagcgttccttgttaca 181  Q
    ||||| | |||||| |||| ||| ||| |||||||||||||    
T  6372964 gaaaa-agagaaatgttttgaccagagtgttccttgttaca 6372925  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 6359538 - 6359443
Alignment:
Q  85 acatcagaaagttatagttactaaataagttataattcatacagtaaaagttaa-tggaaaagaaagaaatattttaacctgagcgttccttgtta 179  Q
    |||||||||||||||||||||||| ||| ||| |||| ||| |||||||||||| ||||||||||| ||||||| ||||||||| ||| |||||||    
T  6359538 acatcagaaagttatagttactaactaatttagaattaatatagtaaaagttaagtggaaaagaaaaaaatattctaacctgagtgttgcttgtta 6359443  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 6359812 - 6359681
Alignment:
Q  45 acaaacttcatagcaaagcatgtgcagcacaaaaac-catgacatcagaaagttatagttactaaataagttataattcatacagtaaaagttaatggaa 143  Q
    ||||| || ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||| ||||  |  ||||||||| ||||       
T  6359812 acaaagtttatagcaaagcatgtgcagcacaaaaaagcatgacagcagaaagttatagttactaaataatttagaattagt--agtaaaagtaaatg--- 6359718  T
Q  144 aagaaagaaatattttaacctgagcgttccttgttaca 181  Q
     | ||| |||||||||||||||||  ||||||||||||    
T  6359717 -aaaaataaatattttaacctgagttttccttgttaca 6359681  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 6404586 - 6404515
Alignment:
Q  193 aagaattagcttctttcggtgttcttgctcgcttcttagtctggacaggtgtaacatctataacaggcttct 264  Q
    |||||||||||  ||| |||| |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  6404586 aagaattagctgattttggtggtcttcctcgcttcttagtctggacaggtgtaacttcaataacaggcttct 6404515  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 440
Target Start/End: Complemental strand, 6372744 - 6372578
Alignment:
Q  269 ggaagcagatttaaaaccagcattaaaagcttttccattagtagtttcaaaagttagagctaaaggtgttcttatactgtcaagactccgaaatttctca 368  Q
    ||||||||||| ||  |||||||||||||  ||||| || ||||||||||||| || ||| || ||||||||| |||          |||||||||||||    
T  6372744 ggaagcagattcaatgccagcattaaaagtctttccgttggtagtttcaaaaggtacagcaaatggtgttcttgtacg---------ccgaaatttctca 6372654  T
Q  369 ggtgaagaacattcaacactgccgttagta----gtattgacttcttcaacagatttgtttgaattctttcctttg 440  Q
    ||||||| |||||||||||  || |||| |    |||||||||||||||| | | |||||||||||||||||||||    
T  6372653 ggtgaagcacattcaacaccaccattaggaaggagtattgacttcttcaaaaaaattgtttgaattctttcctttg 6372578  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 6349344 - 6349291
Alignment:
Q  128 gtaaaagttaatggaaaagaaagaaatattttaacctgagcgttccttgttaca 181  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  6349344 gtaaaagttaatggaaaagaaagaaatattttaacctgggtgttgcttgttaca 6349291  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 6399972 - 6399887
Alignment:
Q  94 agttatagttactaaataagttataattcatacagtaaaagttaatggaaaagaaagaaatattttaacctgagcgttccttgttaca 181  Q
    ||||||||||||||||||| || |||   ||| |||||| ||||||| ||||| ||||||||||| |||||||| |||||||||||||    
T  6399972 agttatagttactaaataatttgtaaa--atatagtaaaggttaatgaaaaaggaagaaatatttgaacctgagtgttccttgttaca 6399887  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 6404664 - 6404613
Alignment:
Q  130 aaaagttaatggaaaagaaagaaatattttaacctgagcgttccttgttaca 181  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||||||||    
T  6404664 aaaagttaacgaaaaagaaagaaatattttaacctgagagttccttgttaca 6404613  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 369
Target Start/End: Complemental strand, 6428336 - 6428234
Alignment:
Q  267 ggggaagcagatttaaaaccagcattaaaagcttttccattagtagtttcaaaagttagagctaaaggtgttcttatactgtcaagactccgaaatttct 366  Q
    ||||||||||||| || |||||||||| |||  ||  |||| ||| |||| |||| || |||||| |||||||||||| |||||||  ||||||||||||    
T  6428336 ggggaagcagattcaacaccagcattagaagtcttctcattggtattttcgaaaggtacagctaatggtgttcttatagtgtcaagcttccgaaatttct 6428237  T
Q  367 cag 369  Q
    |||    
T  6428236 cag 6428234  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 368
Target Start/End: Complemental strand, 6359308 - 6359203
Alignment:
Q  263 ctcaggggaagcagatttaaaaccagcattaaaagcttttccattagtagtttcaaaagttagagctaaaggtgttcttatactgtcaagactccgaaat 362  Q
    |||||||||| |||||| || ||||||||||||||  ||| |||| |||||||||| || || |||||| ||||||| |||| ||| ||||  | |||||    
T  6359308 ctcaggggaatcagattcaacaccagcattaaaagtcttttcattggtagtttcaacaggtacagctaatggtgttcctatattgttaagatcctgaaat 6359209  T
Q  363 ttctca 368  Q
    ||||||    
T  6359208 ttctca 6359203  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 6391568 - 6391503
Alignment:
Q  196 aattagcttctttcggtgttcttgctcgcttcttagtctggacaggtgtaacatctataacaggct 261  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||| || ||  |||||||||    
T  6391568 aattagcttttttcggtggtcttcctcgcttcttagtctggacaggtgtgacctcattaacaggct 6391503  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 6391660 - 6391613
Alignment:
Q  131 aaagttaatggaaaagaaagaaatattttaacctgagcgttccttgtt 178  Q
    |||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  6391660 aaagttaatgaaaaataaagaaatattttaacctgagtgttccttgtt 6391613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 6399840 - 6399786
Alignment:
Q  210 ggtgttcttgctcgcttcttagtctggacaggtgtaacatctataacaggcttct 264  Q
    |||| |||| |||||||||||||||||||||| ||||| || |||||||||||||    
T  6399840 ggtggtcttcctcgcttcttagtctggacaggcgtaacttcaataacaggcttct 6399786  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 6421128 - 6421075
Alignment:
Q  194 agaattagcttctttcggtgttcttgctcgcttcttagtctggacaggtgtaac 247  Q
    ||||||| ||||||| || | |||| ||||||||||||||||| ||||||||||    
T  6421128 agaattaccttcttttggcggtcttcctcgcttcttagtctggccaggtgtaac 6421075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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