View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_1 (Length: 736)
Name: NF3849_low_1
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_1 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 677; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 17 - 736
Target Start/End: Original strand, 38867941 - 38868654
Alignment:
| Q |
17 |
agataacgtgatagggagcggatcttctgggaaggtttacaaagtggtgttgagtaatggagaggcagtggcagtgaagaaattatggggagcagcaact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867941 |
agataacgtgatagggagcggatcttctgggaaggtttacaaagtggtgttgagtaatggagaggcagtggcagtgaagaaattatggggagcagcaact |
38868040 |
T |
|
| Q |
117 |
aagatggaaagtggaaatgtcaaggatcgcgaaaaggatgaatttgaagttgaagttgaaacattgggaaagattaggcacaagaatattgtaaggttat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38868041 |
aagatggaaagtggaaatgtcaaggatcgcgaaaaggatgaatttgaagttgaagttgaaacattgggaaagattaggcacaagaatattgtaaggttat |
38868140 |
T |
|
| Q |
217 |
ggtgctgttatagcagtggagatagtaaactcttagtttatgagtacatgccaaatggaagtttggatgatttgttgcatagtaacaagaagaatttgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38868141 |
ggtgctgttatagcagtggagatagtaaactcttagtttatgagtacatgccaaatggaagtttggatgatttgttgcatagtagcaagaagaatttgtt |
38868240 |
T |
|
| Q |
317 |
ggattggccaacaagacttaaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgtgttgttcctattgttcatagggatgtaaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38868241 |
ggattggccaacaagacttaaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgtgttgttcctattgttcatagggatgtaaaa |
38868340 |
T |
|
| Q |
417 |
tctagtaatatattgctagatggagaatttggtgcaaagattgctgattttggagttgctaaatttgttagaagtgttagcaaagggatagaagaaccca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38868341 |
tctagtaatatattgctagatggagaatttggtgcaaagattgctgattttggagttgctaaatttgttagaagtgttagcaaagggacagaagaaccca |
38868440 |
T |
|
| Q |
517 |
tgtctatgattgcaggatcttgtggttacattgcaccaggtagtactaataatacattaatcattgatttgcctatctttacaattttgttttagtaaat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38868441 |
tgtctatgattgcaggatcttgtggttacattgcaccaggtagtactaataatacattaatcattgatttccctatctttacaattttgttttagtaaat |
38868540 |
T |
|
| Q |
617 |
aatttattgatttatctgatattaaagttactagtaataaactaagtctggtttcatttatgtgatgcagaatatggttatactctaagggtgaatgaaa |
716 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38868541 |
aatttattgatttatctgatattaaagttactagta------taagtctggattcatttatgtgatgcagaatatggttatactcttagggtgaatgaaa |
38868634 |
T |
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| Q |
717 |
agagtgacatttatagcttt |
736 |
Q |
| |
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|||||||||||||||||||| |
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| T |
38868635 |
agagtgacatttatagcttt |
38868654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 292 - 406
Target Start/End: Original strand, 38872126 - 38872239
Alignment:
| Q |
292 |
tgcatagtaacaagaagaatttgttggattggccaacaagacttaaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgtgttgt |
391 |
Q |
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||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
38872126 |
tgcatagtaacaagaagaatttgttggattgac-aactagacttaaaattgctgttgatgctgttgagggactttcttatttgcatcatgattgtgttgt |
38872224 |
T |
|
| Q |
392 |
tcctattgttcatag |
406 |
Q |
| |
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||||||||||||||| |
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| T |
38872225 |
tcctattgttcatag |
38872239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 291 - 421
Target Start/End: Original strand, 38875289 - 38875419
Alignment:
| Q |
291 |
ttgcatagtaacaagaagaatttgttggattggccaacaagacttaaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgtgttg |
390 |
Q |
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|||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| |||||||||||||||||| ||||| |||||| |
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| T |
38875289 |
ttgcatagtagcaagaagaatttgttggattggctaactagacttaaaattgttgtagatgctgctgggggactttcttatttgcattatgatagtgttg |
38875388 |
T |
|
| Q |
391 |
ttcctattgttcatagggatgtaaaatctag |
421 |
Q |
| |
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||| ||||||||||||||||||||||||||| |
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| T |
38875389 |
ttcttattgttcatagggatgtaaaatctag |
38875419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 171 - 478
Target Start/End: Original strand, 4196580 - 4196887
Alignment:
| Q |
171 |
gttgaaacattgggaaagattaggcacaagaatattgtaaggttatggtgctgttatagcagtggagatagtaaactcttagtttatgagtacatgccaa |
270 |
Q |
| |
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|||||||| ||||| ||||||||||| ||||| ||||| | | ||||||| || | || || | ||||| | || || || ||||||||||| ||||||| |
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| T |
4196580 |
gttgaaactttgggcaagattaggcataagaacattgtcaagctatggtgttgctgtaccactagagattgcaagctattggtttatgagtatatgccaa |
4196679 |
T |
|
| Q |
271 |
atggaagtttggatgatttgttgcatagtaa-caagaagaatttgttggattggccaacaagacttaaaattgctgttgatgctgctgagggactttctt |
369 |
Q |
| |
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|||| ||| | | ||||||| ||||||| || ||| || ||||||||||||||||| || ||| || ||| ||| | |||| || || || |||| |
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| T |
4196680 |
atggtagtcttggtgatttgctgcatagcaataaaggag-ggttgttggattggccaactaggtataagatagctcttgcttctgcagaaggcctctctt |
4196778 |
T |
|
| Q |
370 |
atttgcaccatgattgtgttgttcctattgttcatagggatgtaaaatctagtaatatattgctagatggagaatttggtgcaaagattgctgattttgg |
469 |
Q |
| |
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|| |||| ||||| |||||| ||||||||||||||| ||||| ||||||| ||| || ||| | |||| ||| ||| |||||| | | || |||||||| |
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| T |
4196779 |
atctgcatcatgactgtgttcctcctattgttcatagagatgttaaatctaataacatcttgttggatgaagactttagtgcaagggtcgcagattttgg |
4196878 |
T |
|
| Q |
470 |
agttgctaa |
478 |
Q |
| |
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|| ||||| |
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| T |
4196879 |
ggtagctaa |
4196887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 171 - 479
Target Start/End: Complemental strand, 34922823 - 34922515
Alignment:
| Q |
171 |
gttgaaacattgggaaagattaggcacaagaatattgtaaggttatggtgctgttatagcagtggagatagtaaactcttagtttatgagtacatgccaa |
270 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| ||||| | ||||||||| |||| || || | ||| | ||||||| ||||||||||| |||| || |
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| T |
34922823 |
gttgacacattgggaaaaattagacacaagaacattgtcaagttatggtgttgttgtaccacaagggattgccaactcttggtttatgagtatatgcaaa |
34922724 |
T |
|
| Q |
271 |
atggaagtttggatgatttgttgcatagtaacaagaagaat-ttgttggattggccaacaagacttaaaattgctgttgatgctgctgagggactttctt |
369 |
Q |
| |
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|||| ||| | | ||||||| | ||||| | || | || ||||||||||||||||||||| || || ||||| |||||||| || ||||| |||| |
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| T |
34922723 |
atggtagtcttggtgatttgcttcatagcagtaa-aggagggttgttggattggccaacaagatacaagatagctgtggatgctgcagatggactctctt |
34922625 |
T |
|
| Q |
370 |
atttgcaccatgattgtgttgttcctattgttcatagggatgtaaaatctagtaatatattgctagatggagaatttggtgcaaagattgctgattttgg |
469 |
Q |
| |
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|| | || ||||| |||||| || ||||||||||| ||||| ||||||| ||||| ||| | |||||||| |||||||||| | | || |||||||| |
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| T |
34922624 |
atctccatcatgactgtgttcccccaattgttcatagagatgttaaatctaacaatatcttgttggatggagactttggtgcaagggtggcagattttgg |
34922525 |
T |
|
| Q |
470 |
agttgctaaa |
479 |
Q |
| |
|
| | |||||| |
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| T |
34922524 |
actagctaaa |
34922515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 26735913 - 26736015
Alignment:
| Q |
336 |
aaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgtgttgttcctattgttcatagggatgtaaaatctagtaatatattgctag |
435 |
Q |
| |
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||||||||||| || |||||| ||||||||| |||||||||||||||||| || ||| ||||||||||||| || |||| |||||||||||| | |
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| T |
26735913 |
aaaattgctgtggaagctgctaagggactttgctatttgcaccatgattgttcacctcttatcattcatagggatgttaagtctaataatatattgcttg |
26736012 |
T |
|
| Q |
436 |
atg |
438 |
Q |
| |
|
||| |
|
|
| T |
26736013 |
atg |
26736015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 16735155 - 16735205
Alignment:
| Q |
336 |
aaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgt |
386 |
Q |
| |
|
|||||||||||||| |||||| | ||||||| ||||||||| ||||||||| |
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| T |
16735155 |
aaaattgctgttgaagctgctaaaggactttgttatttgcatcatgattgt |
16735205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 4999317 - 4999362
Alignment:
| Q |
367 |
cttatttgcaccatgattgtgttgttcctattgttcatagggatgt |
412 |
Q |
| |
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||||||| ||||||||||||||| | ||||||||||||||||||| |
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| T |
4999317 |
cttatttacaccatgattgtgttcctgctattgttcatagggatgt |
4999362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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