View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_11 (Length: 420)
Name: NF3849_low_11
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 46107910 - 46108296
Alignment:
| Q |
1 |
tataggaaaacaaatatattaaagaagacacaccaatcatgtttaaaagatcaataaaaatcaactcagttgataggaaattcaaggggtcaaagttcaa |
100 |
Q |
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| T |
46107910 |
tataggaaaacaaatatattaaagaagacacaccaatcatgtttaaaa---------------actcagttgataggaaattcaagggttcaaagttcaa |
46107994 |
T |
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| Q |
101 |
ttcccactaatgtgtgatgannnnnnnggcgaggtctatcctgattttggtaagccattcaactcatctaaatttttgtatnnnnnnnttatcgtttaga |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
46107995 |
ttcccactaatgtgtgatgacttttttggcgaggtctatcctaactttggtaagtcattcaactcatctaaatttttgtataaaaaaattatcgtttaga |
46108094 |
T |
|
| Q |
201 |
agcataacttttatttatttttggtaaaaactagaccacataatttatccaagctttctggttaataattgaagtaaatttaggatgataaatttgtgga |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
46108095 |
agcacaacttttatttatttttggtaaaaactagaccacataatttatccaagctttctggttaatgattgaagcaaatttaggatgataaatttgtgga |
46108194 |
T |
|
| Q |
301 |
aatcaaaatcaggagaaccaactagcaagcaatacgtaacatgtcaactgcaattagttcaataagtagggcttaaatgataaaaggttgttggtatttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
46108195 |
aatcaaaatcaggagaaccaactagcaagcaatacgtaacatgtcaactgcaattagttcaataagtagggcttaaattataaaaggttattggtatttg |
46108294 |
T |
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