View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3849_low_15 (Length: 389)
Name: NF3849_low_15
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_15 |
 | |
|
| [»] chr5 (17 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 38453272 - 38452902
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38453272 |
tacttctcttcatgatcatcgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
38453173 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
38453172 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaagaagatctcaatc |
38453073 |
T |
|
| Q |
219 |
atatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
318 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38453072 |
atatgatgttagagtatgatcatatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccttgttaacaacaacaaggcatc |
38452973 |
T |
|
| Q |
319 |
ttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
389 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38452972 |
ttttgattctttaacttccgtcgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
38452902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 38182962 - 38182592
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38182962 |
tactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaag |
38182863 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| |
|
|
| T |
38182862 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38182763 |
T |
|
| Q |
219 |
atatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38182762 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38182663 |
T |
|
| Q |
319 |
ttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
389 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38182662 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38182592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 38188169 - 38188539
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38188169 |
tactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaag |
38188268 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| |
|
|
| T |
38188269 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38188368 |
T |
|
| Q |
219 |
atatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38188369 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38188468 |
T |
|
| Q |
319 |
ttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
389 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38188469 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38188539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 38210188 - 38209818
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38210188 |
tactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaag |
38210089 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| |
|
|
| T |
38210088 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38209989 |
T |
|
| Q |
219 |
atatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38209988 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38209889 |
T |
|
| Q |
319 |
ttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
389 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38209888 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38209818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 38215394 - 38215764
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38215394 |
tactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaag |
38215493 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatc |
218 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| |
|
|
| T |
38215494 |
ctttccacgttcatgttttccgatgtttgtttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38215593 |
T |
|
| Q |
219 |
atatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38215594 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38215693 |
T |
|
| Q |
319 |
ttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
389 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38215694 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38215764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 38185427 - 38185797
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38185427 |
tacttctcttcatgatcatcgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaag |
38185526 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| |
|
|
| T |
38185527 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38185626 |
T |
|
| Q |
219 |
atatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||| || |||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38185627 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatc |
38185726 |
T |
|
| Q |
319 |
ttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
389 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38185727 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38185797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 38212930 - 38212560
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38212930 |
tacttctcttcatgatcatcgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaag |
38212831 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| |
|
|
| T |
38212830 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38212731 |
T |
|
| Q |
219 |
atatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||| || |||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38212730 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatc |
38212631 |
T |
|
| Q |
319 |
ttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
389 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38212630 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38212560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 38169638 - 38170008
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38169638 |
tactgctcttcatgatcatcttcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaag |
38169737 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| |
|
|
| T |
38169738 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccaatttataacgaagaagatctcaatc |
38169837 |
T |
|
| Q |
219 |
atatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
318 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38169838 |
atattatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38169937 |
T |
|
| Q |
319 |
ttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
389 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38169938 |
ttttgattctttggcttccgtcaaatcgctcaatttcgttcgagtttctccttttgaagaatattcatctc |
38170008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 38443223 - 38443540
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443223 |
tactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
38443322 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatc |
218 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| |
|
|
| T |
38443323 |
ctttcctcattcatggtttccaatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccagtttataacgaagaagatctcaatc |
38443422 |
T |
|
| Q |
219 |
atatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443423 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
38443522 |
T |
|
| Q |
319 |
ttttgattctttggcttc |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38443523 |
ttttgattctttggcttc |
38443540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 38183318 - 38183479
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38183318 |
tactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcatcgtcgatcgtaatatcaacttctttgacctcatggcaaag |
38183417 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
180 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183418 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
38183479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 38215039 - 38214878
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaag |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38215039 |
tactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcatcgtcgatcgtaatatcaacttctttgacctcatggcaaag |
38214940 |
T |
|
| Q |
119 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
180 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214939 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
38214878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 216 - 389
Target Start/End: Original strand, 38219953 - 38220126
Alignment:
| Q |
216 |
atcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggc |
315 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
38219953 |
atcatatgatgttcgagtatgatcgtatgtgtcgcttttcacgaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggc |
38220052 |
T |
|
| Q |
316 |
atcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
389 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38220053 |
atcttttgattctttggcttccatcaaatcgctcaattccgttcaagtctctccttttgaagaatattcatctc |
38220126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 155 - 337
Target Start/End: Original strand, 38155845 - 38156027
Alignment:
| Q |
155 |
tatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttt |
254 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| | |||| | | ||| ||||| |
|
|
| T |
38155845 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgagaacgatcgtttatgttgctttt |
38155944 |
T |
|
| Q |
255 |
tacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttcc |
337 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
38155945 |
cacgaaagcctgcaaagttgagggtcttcctcttccctctccctattagcaacaacaaggcatcttttaattctttggcttcc |
38156027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 38197466 - 38197370
Alignment:
| Q |
19 |
tactgctcttcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggca |
115 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38197466 |
tactgctcttcatgatcatcttcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggca |
38197370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 28340977 - 28341142
Alignment:
| Q |
83 |
gatcgtaatatcaacttctccgacctcatggcaaagctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatg |
182 |
Q |
| |
|
|||||||||||||| |||||||||||| | | ||||||||| | ||||||| | |||| |||||||||||| || |||| |||||||||| | ||| |
|
|
| T |
28340977 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctccctggtgaagatcttaatg |
28341076 |
T |
|
| Q |
183 |
ctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
248 |
Q |
| |
|
||||||| | ||| | ||||| | ||||| || |||||||| | |||||||||| |||||||| |
|
|
| T |
28341077 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtc |
28341142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 28382845 - 28382787
Alignment:
| Q |
44 |
tattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctc |
102 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
28382845 |
tattcctacatcggcggtgacaccaaaatcctcaccgtcgatcgtagtatcaaattctc |
28382787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 28399676 - 28399575
Alignment:
| Q |
144 |
tttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatat |
243 |
Q |
| |
|
||||||||||||||||||| | |||| ||||| ||||| |||||||||| || | ||| | ||||| | ||| |||||||||| |||||||| |||| |
|
|
| T |
28399676 |
tttgcttcaagtatcaacttcctggtcaagatctcgatactttgatcccagtcttaaaccaggaagatttggatgatatgatgttcaagtatgattatat |
28399577 |
T |
|
| Q |
244 |
gt |
245 |
Q |
| |
|
|| |
|
|
| T |
28399576 |
gt |
28399575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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