View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3849_low_16 (Length: 388)
Name: NF3849_low_16
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_16 |
 | |
|
| [»] scaffold0657 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0657 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 7711 - 7346
Alignment:
| Q |
18 |
tatatgacggattctttggtggtagttgatcaatgtgttgtgtaatccagatattcaatttgcttaagggaacatcttagtctttgattttaatctttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
7711 |
tatatgacggattctttggtggtagttgatcagtgtgttgtgtaatccagatattcaatttgcttaagagaacatcttagtctttgattttgatctttga |
7612 |
T |
|
| Q |
118 |
atgcttgattcattttgtgtgttgttagcaagactttagagattagaagtgttgaaattgctttgactaaattgctatatgcatagagttgtggtgatac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7611 |
atgcttgattcattttgtgtgttgttagcaagactttagagattagaagtgttgaaattgctttgactaaattgctatatgcatagagttgtggtgatac |
7512 |
T |
|
| Q |
218 |
tttaccttataaatgatttttataggattagcctatcaatttcctttgttgatgttcttgttattataatttgnnnnnnnagtctgtcactaaaactgtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7511 |
tttaccttataaatgatttttataggattagcctatcaatttcctttgttgatgttcttgttattataatttgtttttttagtctgtcactaaaactgtt |
7412 |
T |
|
| Q |
318 |
ttactgtattttgttttctggtgtctatcactgaatgtattccctgtttttgttgtttctgattta |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7411 |
ttactgtattttgttttctggtgtctatcactgaatgtattccctgtttttgttgtttctgtttta |
7346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 42863338 - 42863495
Alignment:
| Q |
18 |
tatatgacggattctttggtggtagtt-gatcaatgtgttgtgtaatccagatattcaatttgcttaagggaacatcttagtctttgattttaatctttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
42863338 |
tatatgacggattctttggtggtagtttgatcagtgtgttgtgtgatcaagatattcaatt-------------atctttgtctttgattttgatctttg |
42863424 |
T |
|
| Q |
117 |
aatgcttgattcattttgtgtgttgttagcaagactttagagattagaagtgttgaaattgctttgactaa |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42863425 |
aatgcttgattcattttgtgtgttgttagcaaaactttagagattaaaagtgttgaaattgctttgactaa |
42863495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 1202795 - 1202697
Alignment:
| Q |
18 |
tatatgacggattctttggtggtagttgatcaatgtgttgtgtaatccagatattcaatttgcttaagggaac------atcttagtctttgattttaa |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
1202795 |
tatatgagggattctttggtggtagttgatcagtgtgttgtgtgatccagatattcaatttgcttaagagaacacaattatcttagtctttgattttaa |
1202697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 19813874 - 19813776
Alignment:
| Q |
18 |
tatatgacggattctttggtggtagttgatcaatgtgttgtgtaatccagatattcaatttgcttaagggaac------atcttagtctttgattttaa |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
19813874 |
tatatgagggattctttggtggtagttgatcagtgtgttgtatgatccagatattcaatttgcttaagagaacacaattatcttagtctttgattttaa |
19813776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University