View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_17 (Length: 380)
Name: NF3849_low_17
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_17 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 39597194 - 39596829
Alignment:
| Q |
11 |
cataggctaaatcctcaacaacaacaactatgaagttaacaacaatgtctttttccataaggtagaatctactacaaggatcaatcatgtgatgcattta |
110 |
Q |
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| T |
39597194 |
cataggctaaatcctcaacaacaacaactatgaagttaacaacaatgtctttttccataaggtagaatctactacaaggatcaatcatgtgatgtattta |
39597095 |
T |
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| Q |
111 |
ggtcaaaagataaaccattcccatttgaattataataatcaatgcaatcatannnnnnnnaaa-gnnnnnnncagaaagagcatagcaacttactgatcg |
209 |
Q |
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| T |
39597094 |
ggtcaaaagataaaccattcccatttgaattataataatcaatgcaatcatattttttttaaaagaaaaaaacagaaagagcatagcaacttactgatcg |
39596995 |
T |
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| Q |
210 |
agtaaaccatcaacatagttcctgattttgtatgacaatctcgaataggattttgataagtcactatcattttaacaagttatactatcattttggtccc |
309 |
Q |
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| T |
39596994 |
agtaaaccatcaacctagt-----attttgtatgacaatctcgaatagggttttgacaagtcactatcattttaacaagttatactatcattttggtccc |
39596900 |
T |
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| Q |
310 |
taagtttatccacttactatcagtttaatcattaacctattccttaaaaggactaatatgagtaaaatttg |
380 |
Q |
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| T |
39596899 |
taagtttatccacttactatcagtttaatccttaacctattccttaaaaggactaatatgagtaaaatttg |
39596829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 14748252 - 14748322
Alignment:
| Q |
310 |
taagtttatccacttactatcagtttaatcattaacctattccttaaaaggactaatatgagtaaaatttg |
380 |
Q |
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| T |
14748252 |
taagtttatccactttctatcaatttattccttatcatgttctttaaaatgactagtatgagtaaaatttg |
14748322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 8787537 - 8787500
Alignment:
| Q |
293 |
actatcattttggtccctaagtttatccacttactatc |
330 |
Q |
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| T |
8787537 |
actatcaatttggtccctaagtttatccacgtactatc |
8787500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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