View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_18 (Length: 352)
Name: NF3849_low_18
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 7119312 - 7118983
Alignment:
| Q |
19 |
ataccattggactacaccttcagagactcaaatcaaaatatattggtcccgcgtaatggtgtatgtgcaaggggttctgagatatttgcattggattcca |
118 |
Q |
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| T |
7119312 |
ataccattggactacaccttcagagactcaaatcaaaatatattggtcctgcgtaatggtgtatgtgcaaggggttctgagatatttgcattggattcca |
7119213 |
T |
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| Q |
119 |
tcctcctatggatttgcagattctgaagcaaatctttttatgctaaaagtcttattctannnnnnnnnnnnngcctcattcagtcattccttaccaagtc |
218 |
Q |
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| T |
7119212 |
tcctcctatggatttgcagattctgaagcaaatcttttcatgctaaaagtcttattctatttttacttttttgcctcattcagtcattccttaccaagtc |
7119113 |
T |
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| Q |
219 |
tccaaaatgatagtcaagactttggtttgttaagtgagatgagctatttcatgtaaattgaattattgatcatatatgaaaag--nnnnnnnnntgatgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
7119112 |
tccaaaatgatagtcaagactttggtttgttaagtgagatgagctatttcatgtaaatcgaattattgatcatatatgaaaagaacaaaaaaaatgatgt |
7119013 |
T |
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| Q |
317 |
taccctcaatcacacaagtgagtataattt |
346 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
7119012 |
taccctcaatcacacaagtgagtatgattt |
7118983 |
T |
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