View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_20 (Length: 341)
Name: NF3849_low_20
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 324
Target Start/End: Original strand, 48788601 - 48788921
Alignment:
| Q |
5 |
gtctttaaacttgttttctcaaacgagttttctggaccgtcgatatcaaaatcaagatagtacatgtagaaatgatcatgataaactccaatgctgttag |
104 |
Q |
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| T |
48788601 |
gtctttaaacttgttttctcaaacgagttttctggaccgtcgatatcaaaatcaagatagtacatgtagaaatgatcatggtaaactccaatgctgttag |
48788700 |
T |
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| Q |
105 |
ctgaaaccaatttaccatacagttctcccttaatctcattcgtgtgcttaatgtttgttcccttaatttccagtatacccgatagtgcaatctgtatagt |
204 |
Q |
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| T |
48788701 |
ctgaaaccaatttaccatacagttctcccttaatctcattcgtgtgcttaatgtttgttcccttaatttccagtatacccgatagtgcaatctgtatagt |
48788800 |
T |
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| Q |
205 |
ttacatacataaatttagaaaaattaattaatcattattacgtaagtgtgcaaggacatgcaagtaggcttat-ctaggnnnnnnntggacaggacatgc |
303 |
Q |
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| T |
48788801 |
ttacatacataaatttagaaaaattaattaatcagaattacgtaagtgtgcaaggacatgcaagtaggcttatactaggaaaaaaatagacagggcatgc |
48788900 |
T |
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| Q |
304 |
acgggaagtggggtatgctgt |
324 |
Q |
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| T |
48788901 |
acgtgaagtggggtatgctgt |
48788921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 15824639 - 15824834
Alignment:
| Q |
8 |
tttaaacttgttttctcaaacgagttttctggaccgtcgatatcaaaatcaagatagtacatgtagaaatgatcatgataaactccaatgctgttagctg |
107 |
Q |
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| T |
15824639 |
tttaaatttgttttctcaaacgagttttctgcaccgtcgatatcaaaatcaagatagtaaatgtagaaatggtcatggtaaattccaatgctgtttgctg |
15824738 |
T |
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| Q |
108 |
aaaccaatttaccatacagttctcccttaatctcattcgtgtgcttaatgtttgttcccttaatttccagtatacccgatagtgcaatctgtatag |
203 |
Q |
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| T |
15824739 |
ataccaatttaccatataattctcccttaatctcatcattgtgcttgatgtttgttgccttaatttccagtatacctgatagtgctatctgtatag |
15824834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 48815032 - 48815230
Alignment:
| Q |
1 |
tacggtctttaaacttgttttctcaaacgagttttctggaccgtcgatatcaaaatcaagatagtacatgtagaaatgatcatgataaactccaatgctg |
100 |
Q |
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| T |
48815032 |
tacggtttttaaacttgttttctcaaatgaattttgaacaccgtcgatatcaaaatcaagatagtacatgtagaaatggtcatggtaaataccaatgctg |
48815131 |
T |
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| Q |
101 |
ttagctgaaaccaatttaccatacagttctcccttaatctcattcgtgtgcttaatgtttgttcccttaatttccagtatacccgatagtgcaatctgt |
199 |
Q |
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| T |
48815132 |
tttgctgataccaatttgccatgtaaatcttctttaatctcatccttgtgcttgatatttgttcccttgatttccaatatacccgacagtgctatctgt |
48815230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 48835306 - 48835111
Alignment:
| Q |
5 |
gtctttaaacttgttttctcaaacgagttttctggaccgtcgatatcaaaatcaagatagtacatgtagaaatgatcatgataaactccaatgctgttag |
104 |
Q |
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||||||||||||||||||||||| ||||| | || ||| || ||||||| |||||| ||||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
48835306 |
gtctttaaacttgttttctcaaatgagttgtgtgtaccatcaatatcaagatcaaggtagtaaatgtagaaatggtcatggtaaactccaatgctgtttt |
48835207 |
T |
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| Q |
105 |
ctgaaaccaatttaccatacagttctcccttaatctcattcgtgtgcttaatgtttgttcccttaatttccagtatacccgatagtgcaatctgta |
200 |
Q |
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| T |
48835206 |
ctgacaccaatgtaccatgtaaatcttccttgatctcatccttgtgcttaatgtttgttgccttaatttcaagtatacctgataatgctatctgta |
48835111 |
T |
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