View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_23 (Length: 327)
Name: NF3849_low_23
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 45113284 - 45112997
Alignment:
| Q |
1 |
ctttcactttgacatcaggaagaaaatcatttattggtctaagataattgtcaagattcatttcacaagaattttcctcattgagaagtattattggttc |
100 |
Q |
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| T |
45113284 |
ctttcactttgacatcaggaagaaaattatttattggtctaagataattgtcaagattcatttcacaagaattttccttattgagaagtattattggttc |
45113185 |
T |
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| Q |
101 |
tttgcctctcttgctttgttgtacttctaactccatcactcgtttttgaagtttttccatgtaattgatagcgccttgaactatagaggccttgtctgtc |
200 |
Q |
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| T |
45113184 |
tttgcctctcttgttttgttgtacttctaactccatcactcgtttttgaagtttttccacgtaattgatagcgccttgaactatagaggccttgtctgtc |
45113085 |
T |
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| Q |
201 |
tgtcgaaaaggaaatacattaaattcgagtcaataagacaataacacaatttggatttaactcatgagttagtatagtatgtggacgt |
288 |
Q |
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| T |
45113084 |
tgtcgaaaaggaaatacattaaattcgagtcaataagacaataacacaatttggatttaactcatgagttagtatagtatgtggacgt |
45112997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 45124564 - 45124401
Alignment:
| Q |
1 |
ctttcactttgacatcaggaagaaaatcatttattggtctaagataattgtcaagattcatttcacaagaattttcctcattgagaagtattattggttc |
100 |
Q |
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|||||||||||||||| ||||| || |||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| |
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| T |
45124564 |
ctttcactttgacatctggaagcaattcattt---ggtctaaaacaattgtcaagattcatttcacaagaattttccttattgaaaagtatcattggttc |
45124468 |
T |
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| Q |
101 |
tttgcctctcttgctttgttgtacttctaactccatcactcgtttttgaagtttttccatgtaattg |
167 |
Q |
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| T |
45124467 |
tttgcctctcttgttttgttgtgcttctaactccttcactcgtttctggagttgctccacgtaattg |
45124401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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